| Title: | Database of Somatic Flags |
| Version: | 0.1.0 |
| Description: | Database of genes which frequently sustain somatic mutations, but are unlikely to drive cancer. |
| License: | MIT + file LICENSE |
| Encoding: | UTF-8 |
| LazyData: | true |
| RoxygenNote: | 7.3.1 |
| Depends: | R (≥ 2.10) |
| Suggests: | usethis, devtools |
| URL: | https://github.com/CCICB/somaticflags |
| BugReports: | https://github.com/CCICB/somaticflags/issues |
| NeedsCompilation: | no |
| Packaged: | 2024-07-07 23:04:50 UTC; selkamand |
| Author: | Sam El-Kamand 
[aut, cre],
Children's Cancer Institute Australia [cph] |
| Maintainer: | Sam El-Kamand <selkamand@ccia.org.au> |
| Repository: | CRAN |
| Date/Publication: | 2024-07-09 15:50:06 UTC |
Somatic Flags Dataset
Description
a list of genes which are frequently mutated in somatic cancer datasets but are unlikely to drive disease.
Usage
somaticflags
Format
A vector with 139 gene names:
Source
doi:10.1038/nature12213 and doi:10.1186/s12920-014-0064-y
Examples
data(somaticflags)
head(somaticflags)
Somatic Flags Dataset
Description
a list of genes which are frequently mutated in somatic cancer datasets but are unlikely to drive disease.
Usage
somaticflags_df
Format
A data.frame with 139 gene names:
- Gene
Genes frequently mutated in somatic cancer datasets but that are unlikely to drive disease
- Source
Supporting papers for the gene being a somatic flag
- Reason
Explanation for the gene being considered a somatic flag
...
Source
doi:10.1038/nature12213 and doi:10.1186/s12920-014-0064-y
Examples
data(somaticflags_df)
head(somaticflags_df)