Title: Human Gene Annotation Data from 'Ensembl'
Version: 1.0.0
Description: Gene information from 'Ensembl' genome builds 'GRCh38.p14' and 'GRCh37.p13' to use with the 'topr' package. The datasets were originally downloaded from https://ftp.ensembl.org/pub/current/gtf/homo_sapiens/Homo_sapiens.GRCh38.111.gtf.gz and https://ftp.ensembl.org/pub/grch37/current/gtf/homo_sapiens/Homo_sapiens.GRCh37.87.gtf.gz and converted into the format required by the 'topr' package. See https://github.com/totajuliusd/topr?tab=readme-ov-file#how-to-use-topr-with-other-species-than-human to see the required format.
License: LGPL (≥ 3)
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
RoxygenNote: 7.2.3
Suggests: testthat (≥ 3.0.0), knitr, rmarkdown, markdown
Config/testthat/edition: 3
Depends: R (≥ 3.5.0)
NeedsCompilation: no
Packaged: 2024-01-31 10:59:17 UTC; tota
Author: Thorhildur Juliusdottir [cph, aut, cre]
Maintainer: Thorhildur Juliusdottir <totajuliusd@gmail.com>
Repository: CRAN
Date/Publication: 2024-02-02 12:40:05 UTC

enshuman

Description

Human gene annotation datasets to use with the 'topr' package

datasets

The two datasets are:

Examples

library(enshuman)
head(hg38)
head(hg37)

Ensembl genes build GRCh37.87

Description

wget https://ftp.ensembl.org/pub/grch37/current/gtf/homo_sapiens/Homo_sapiens.GRCh37.87.gtf.gz

Usage

hg37

Format

A data frame with 55,882 rows and 7 variables:

chrom

chromosome

gene_start

genetic position of gene start

gene_end

genetic position of gene end

gene_symbol

The name of the gene

biotype

the biotype of the gene

exon_chromstart

genetic positions of exon start

exon_chromend

genetic position of exon end

Ensembl genes build GRCh38.111

Description

wget https://ftp.ensembl.org/pub/current/gtf/homo_sapiens/Homo_sapiens.GRCh38.111.gtf.gz

Usage

hg38

Format

A data frame with 41,016 rows and 7 variables:

chrom

chromosome

gene_start

genetic position of gene start

gene_end

genetic position of gene end

gene_symbol

the name of the gene

biotype

the biotype of the gene

exon_chromstart

genetic positions of exon start

exon_chromend

genetic position of exon end