| Type: | Package |
| Title: | Combination of Independent P-Values |
| Version: | 0.1.4 |
| URL: | https://github.com/StatsGirl/Master2021/tree/main/R |
| BugReports: | https://github.com/StatsGirl/Master2021/issues |
| Description: | Provides access to six fundamental statistics that can be used for the purpose of combination p-values. All methods used can referenced here: Heard & Rubin-Delanchy (2017) <doi:10.48550/arXiv.1707.06897>. |
| License: | MIT + file LICENSE |
| Depends: | R (≥ 3.5.0) |
| Imports: | chi, utils, dplyr, spatstat.utils, stats |
| Encoding: | UTF-8 |
| RoxygenNote: | 7.1.1 |
| Suggests: | testthat (≥ 3.0.0) |
| Config/testthat/edition: | 3 |
| NeedsCompilation: | no |
| Packaged: | 2021-09-03 18:26:58 UTC; breyawalker |
| Author: | Breya McGlown [cre, aut] |
| Maintainer: | Breya McGlown <bswlker2@memphis.edu> |
| Repository: | CRAN |
| Date/Publication: | 2021-09-03 19:00:02 UTC |
CombinedPValueMethod
Description
#' Input is the test statistic of the previous method selected and it returns the combined p-value
Usage
CombinedPValueMethod(x, name)
Arguments
x |
#' test statistic of method used (i.e., Tippett, Stouffer, etc.) |
name |
# name of method using |
Value
Combined P-value
Examples
Output <- SumOfPs(0.1,0.3,.7)
Final <- TippettMethod(Output)
Combined <- CombinedPValueMethod(Final,"Tippett")
Edgington Method
Description
#' Combination p-value method that uses Edgington statistic Summation i=1 to n pi where p equals p-value
Usage
EdMethod(x)
Arguments
x |
#' SumOfPs |
Value
Combined P-value
Examples
Output <- SumOfPs(0.1,0.3,.7)
Final <- EdMethod(Output)
FishersMethod
Description
#' Combination p-value method that uses Fishers statistic Summation i=1 to n log of pi where p equals p-value
Usage
FishersMethod(x)
Arguments
x |
#' SumOfPs |
Value
Combined P-value
Examples
Output <- SumOfPs(0.1,0.3,.7)
Final <- FishersMethod(Output)
PearsonsMethod
Description
#' Combination p-value method that uses George statistic Summation i=1 to n log(pi/(1-pi)) where p equals p-value
Usage
GeorgeMethod(x)
Arguments
x |
#' SumOfPs |
Value
Combined P-value
Examples
Output <- SumOfPs(0.1,0.3,.7)
Final <- GeorgeMethod(Output)
PearsonsMethod
Description
#' Combination p-value method that uses Pearson statistic -Summation i= 1 to n log(1-pi) where p equals p value
Usage
PearsonsMethod(x)
Arguments
x |
#' InfinitePs |
Value
Combined P-value
Examples
Output <- SumOfPs(0.1,0.3,.7)
Final <- PearsonsMethod(Output)
StoufferMethod
Description
#' Combination p-value method that uses Stouffer statistic Summation i=1 to n inverse CDF of N(0,1)(pi) where p equals p-value
Usage
StoufferMethod(x)
Arguments
x |
#' SumOfPs |
Value
Combined P-value
Examples
Output <- SumOfPs(0.1,0.3,.7)
Final <- StoufferMethod(Output)
SumOfPs
Description
Converts a list of p-values into a list, n= 2,3,...,k
Usage
SumOfPs(x, ...)
Arguments
x |
#' Input n p-values n = 2,3,...,k |
... |
#list of p values |
Value
List of p-values
Examples
Output <- SumOfPs(0.1,0.3,.7)
TippettMethod
Description
#' Combination p-value method that uses Tippett statistic min(p1,...,pn), n= 2,3,...,k where p equals p-value
Usage
TippettMethod(x)
Arguments
x |
#' SumOfPs |
Value
Combined P-value
Examples
Output <- SumOfPs(0.1,0.3,.7)
Final <- TippettMethod(Output)