X                       Covariate matrix of dataset 'autism'
autism                  Autism dataset
avedist                 Average minimal distance between batches
ba                      Batch effect adjustment using a method of
                        choice
baaddon                 Addon batch effect adjustment
bametric                Diverse metrics for quality of (adjusted) batch
                        data
bapred-package          The bapred package
batch                   batch variable of dataset 'autism'
combatba                Batch effect adjustment using ComBat
combatbaaddon           Addon batch effect adjustment using ComBat
corba                   Mean correlation before and after batch effect
                        adjustment
diffexprm               Measure for performance of differential
                        expression analysis (after batch effect
                        adjustment)
fabatch                 Batch effect adjustment using FAbatch
fabatchaddon            Addon batch effect adjustment using FAbatch
kldist                  Kullback-Leibler divergence between density of
                        within and between batch pairwise distances
meancenter              Batch effect adjustment by mean-centering
meancenteraddon         Addon batch effect adjustment for
                        mean-centering
noba                    No batch effect adjustment
nobaaddon               No addon batch effect adjustment
pcplot                  Visualization of batch effects using Principal
                        Component Analysis
pvcam                   Proportion of variation induced by class signal
                        estimated by Principal Variance Component
                        Analysis
qunormaddon             Addon quantile normalization using
                        "documentation by value" (Kostka & Spang, 2008)
qunormtrain             Quantile normalization with "documentation by
                        value" (Kostka & Spang, 2008)
ratioa                  Batch effect adjustment using Ratio-A
ratioaaddon             Addon batch effect adjustment for Ratio-A
ratiog                  Batch effect adjustment using Ratio-G
ratiogaddon             Addon batch effect adjustment for Ratio-G
rmaaddon                Addon RMA normalization using "documentation by
                        value" (Kostka & Spang, 2008)
rmatrain                RMA normalization with "documentation by value"
                        (Kostka & Spang, 2008)
sepscore                Separation score as described in Hornung et al.
                        (2016)
skewdiv                 Skewness divergence score
standardize             Batch effect adjustment by standardization
standardizeaddon        Addon batch effect adjustment for
                        standardization
svaba                   Batch effect adjustment using SVA
svabaaddon              Addon batch effect adjustment using frozen SVA
y                       Target variable of dataset 'autism'
