DGEobj-package          DGEobj Package Overview
[.DGEobj                Subset with square brackets
addItem                 Add a data item
addItems                Add multiple data items
annotateDGEobj          Add annotations
as.list.DGEobj          Cast as a simple list
baseType                Get the baseType of an internal data item
baseTypes               Get a list of the available baseTypes
dim.DGEobj              Get the "assay" dimensions (row/genes by
                        col/samples)
dimnames.DGEobj         Get the "assay" names (row/genes by
                        col/samples)
getAttributes           Get all attributes
getBaseType             Retrieve data items by baseType
getItem                 Retrieve a data item by name
getItems                Retrieve multiple data items by name
getType                 Retrieve data items by type
initDGEobj              Initialize with base data (primaryAssayData,
                        row annotations, col annotations)
initDGEobjDef           Instantiate a class DGEobjDef object.
inventory               Retrieve the object inventory
newType                 Add a new type definition to a DGEobj
print.DGEobj            Print the Inventory
resetDGEobj             Reset to original data
rmItem                  Removes a named data item
setAttributes           Set attributes
showAttributes          Print attributes
showMeta                Retrieve the Key/Value metadata attributes that
                        have a character value and length of 1
showTypes               Returns and prints the list of all defined
                        types
subset.DGEobj           Subset internal row or column data
