colNormalize            Normalize each column of the input matrix by
                        the column sum
plotBinary              Create binary plots
plotQuaternary          Create quaternary simplex plots
plotQuaternary.Seurat   Craete quaternary simplex plot with Seurat
                        object
plotQuaternary.SingleCellExperiment
                        Create quaternary simplex plot with
                        SingleCellExperiment object
plotQuaternary.simMat   Create quaternary simplex plot with
                        pre-calculated similarity matrix
plotTernary             Create ternary simplex plots
plotTernary.Seurat      Create ternary simplex plot with Seurat objects
plotTernary.SingleCellExperiment
                        Create ternary simplex plot with
                        SingleCellExperiment objects
plotTernary.simMat      Create quaternary simplex plot with
                        pre-calculated similarity matrix
print.quatPlot          Show plist object produced with plot3D package
readH5ADObsNames        Extract 'adata.obs_names' from an H5AD file
readH5ADObsVar          Extract a variable from adata.obs stored in an
                        H5AD file
readH5ADUnsSpMat        Extract a sparse matrix from adata.uns stored
                        in an H5AD file
readVelocytoLoom        Extract the raw counts from a LOOM file
rnaCluster              Major cell type annotation of the example mouse
                        bone marrow data
rnaRaw                  Mouse bone marrow scRNAseq example data
rnaVelo                 Velocity graph of the example mouse bone marrow
                        data
selectTopFeatures       Pick top differentially presented features for
                        similarity calculation
writeQuaternaryGIF      Create GIF image for dynamic rotating view of
                        3D quaternary simplex plot
