LEVEL	TAXA	ROLLUP	ASSIGNED	TAXID
root	root	5622293	57696	1
superkingdom	Bacteria	5323049	16488	2
superkingdom	Archaea	239877	12	2157
superkingdom	Viruses	1543	1	10239
phylum	Firmicutes	3272075	2536	1239
phylum	Proteobacteria	2005001	4242	1224
phylum	Euryarchaeota	239864	57	28890
phylum	Deinococcus-Thermus	14869	0	1297
phylum	Actinobacteria	13126	0	201174
phylum	Bacteroidetes	1402	3	976
phylum	Tenericutes	35	0	544448
phylum	Cyanobacteria	10	1	1117
phylum	Aquificae	8	0	200783
phylum	Chloroflexi	5	0	200795
phylum	Acidobacteria	4	0	57723
phylum	Armatimonadetes	3	0	67819
phylum	Thermotogae	3	0	200918
phylum	Spirochaetes	3	0	203691
phylum	Deferribacteres	2	0	200930
phylum	Dictyoglomi	1	0	68297
phylum	Chlamydiae	1	0	204428
phylum	Candidatus Saccharibacteria	1	0	95818
phylum	Elusimicrobia	1	0	74152
phylum	Nitrospirae	1	0	40117
phylum	Thaumarchaeota	1	0	651137
phylum	Planctomycetes	1	0	203682
phylum	Thermodesulfobacteria	1	0	200940
phylum	Chlorobi	1	0	1090
subphylum	delta/epsilon subdivisions	5751	0	68525
class	Bacilli	3193335	7223	91061
class	Alphaproteobacteria	1364928	6302	28211
class	Gammaproteobacteria	622964	1827	1236
class	Methanobacteria	239807	0	183925
class	Clostridia	76200	15	186801
class	Deinococci	14869	3	188787
class	Actinobacteria	13126	2	1760
class	Betaproteobacteria	7116	11	28216
class	Epsilonproteobacteria	5732	2	29547
class	Bacteroidia	1384	0	200643
class	Mollicutes	35	1	31969
class	Deltaproteobacteria	19	1	28221
class	Aquificae	8	0	187857
class	Sphingobacteriia	6	0	117747
class	Flavobacteriia	4	0	117743
class	Acidobacteriia	3	0	204432
class	Coriobacteridae	3	0	84998
class	Spirochaetia	3	0	203692
class	Thermotogae	3	0	188708
class	Chthonomonadetes	3	0	1077257
class	Cytophagia	3	0	768503
class	Chloroflexi	3	2	32061
class	Erysipelotrichia	2	0	526524
class	Deferribacteres	2	0	68337
class	Negativicutes	2	0	909932
class	Rubrobacteridae	1	0	84995
class	Nitrospira	1	0	203693
class	Anaerolineae	1	0	292625
class	Chlorobia	1	0	191410
class	Thermodesulfobacteria	1	0	67799
class	Chlamydiia	1	0	204429
class	Dictyoglomia	1	0	203486
class	Gloeobacteria	1	0	307596
class	Elusimicrobia	1	0	641853
class	Acidimicrobidae	1	0	84992
class	Planctomycetia	1	0	203683
class	Dehalococcoidia	1	0	301297
subclass	Oscillatoriophycideae	7	1	1301283
order	Bacillales	2680128	3151	1385
order	Rhodobacterales	1358443	50	204455
order	Lactobacillales	505984	427	186826
order	Enterobacteriales	458763	0	91347
order	Methanobacteriales	239807	2	2158
order	Pseudomonadales	159173	4	72274
order	Clostridiales	76173	82	186802
order	Deinococcales	14865	3	118964
order	Actinomycetales	13111	21	2037
order	Propionibacterineae	12928	1	85009
order	Neisseriales	6980	0	206351
order	Campylobacterales	5729	3	213849
order	Xanthomonadales	3142	0	135614
order	Caudovirales	1531	0	28883
order	Bacteroidales	1384	6	171549
order	Corynebacterineae	144	1	85007
order	Rhizobiales	123	10	356
order	Burkholderiales	117	8	80840
order	Mycoplasmatales	31	0	2085
order	Rhodospirillales	23	0	204441
order	Alteromonadales	21	0	135622
order	Sphingomonadales	16	2	204457
order	Caulobacterales	13	0	204458
order	Thermoanaerobacterales	11	1	68295
order	Oceanospirillales	8	0	135619
order	Aquificales	8	0	32069
order	Rhodocyclales	7	0	206389
order	Aeromonadales	6	0	135624
order	Sphingobacteriales	6	0	200666
order	Chromatiales	6	0	135613
order	Myxococcales	6	0	29
order	Vibrionales	6	0	135623
order	Streptosporangineae	5	0	85012
order	Desulfovibrionales	5	0	213115
order	Pasteurellales	5	0	135625
order	Chroococcales	5	1	1118
order	Streptomycineae	5	0	85011
order	Desulfobacterales	5	0	213118
order	Flavobacteriales	4	2	200644
order	Micrococcineae	4	0	85006
order	Thermotogales	3	0	2419
order	Bifidobacteriales	3	0	85004
order	Acidobacteriales	3	0	204433
order	Chthonomonadales	3	0	1077263
order	Cytophagales	3	0	768507
order	Spirochaetales	3	0	136
order	Coriobacteriales	3	0	84999
order	Erysipelotrichales	2	0	526525
order	Deferribacterales	2	0	191393
order	Selenomonadales	2	0	909929
order	Thiotrichales	2	0	72273
order	Entomoplasmatales	2	0	186328
order	Rickettsiales	2	0	766
order	Catenulisporineae	2	0	414714
order	Acidimicrobiales	1	0	84993
order	Rubrobacterales	1	0	84996
order	Nitrospirales	1	0	189778
order	Dictyoglomales	1	0	203487
order	Anaerolineales	1	0	292629
order	Herpesvirales	1	0	548681
order	Pseudonocardineae	1	0	85010
order	Chlorobiales	1	0	191411
order	Nautiliales	1	0	235899
order	Legionellales	1	0	118969
order	Chloroflexales	1	0	32064
order	Gloeobacterales	1	0	307595
order	Nitrososphaerales	1	0	1033996
order	Halanaerobiales	1	0	53433
order	Methylococcales	1	0	135618
order	Oscillatoriales	1	0	1150
order	Thermodesulfobacteriales	1	0	188710
order	SAR11 cluster	1	0	54526
order	Dehalococcoidales	1	0	1202465
order	Desulfuromonadales	1	0	69541
order	Bacteroidetes Order II. Incertae sedis	1	0	1100069
order	Thermales	1	0	68933
order	Micromonosporineae	1	0	85008
order	Elusimicrobiales	1	0	641854
order	Chlamydiales	1	0	51291
order	Syntrophobacterales	1	0	213462
order	Planctomycetales	1	0	112
order	Acholeplasmatales	1	0	186329
suborder	Cystobacterineae	3	0	80811
suborder	Sorangiineae	2	0	80812
suborder	Nannocystineae	1	0	224462
family	Staphylococcaceae	2655234	4335	90964
family	Rhodobacteraceae	1358391	5440	31989
family	Streptococcaceae	504863	305	1300
family	Enterobacteriaceae	458763	351874	543
family	Methanobacteriaceae	239805	166	2159
family	Pseudomonadaceae	132510	415	135621
family	Clostridiaceae	76060	15	31979
family	Moraxellaceae	26659	10	468
family	Bacillaceae	17443	17	186817
family	Deinococcaceae	14862	0	183710
family	Propionibacteriaceae	12927	1	31957
family	Neisseriaceae	6980	4	481
family	Helicobacteraceae	5726	5	72293
family	Listeriaceae	4283	0	186820
family	Xanthomonadaceae	3142	153	32033
family	Siphoviridae	1530	19	10699
family	Bacteroidaceae	1365	0	815
family	Lactobacillaceae	401	1	33958
family	Enterococcaceae	274	1	81852
family	Nocardiaceae	126	1	85025
family	Burkholderiaceae	83	5	119060
family	Rhizobiaceae	40	1	82115
family	Mycoplasmataceae	31	0	2092
family	Bradyrhizobiaceae	23	1	41294
family	Methylobacteriaceae	20	0	119045
family	Rhodospirillaceae	18	0	41295
family	Corynebacteriaceae	17	0	1653
family	Alteromonadaceae	16	0	72275
family	Comamonadaceae	16	2	80864
family	Lachnospiraceae	14	0	186803
family	Caulobacteraceae	13	1	76892
family	Phyllobacteriaceae	13	0	69277
family	Sphingomonadaceae	13	1	41297
family	Prevotellaceae	12	0	171552
family	Carnobacteriaceae	12	0	186828
family	Paenibacillaceae	10	0	186822
family	Peptostreptococcaceae	8	0	186804
family	Thermoanaerobacteraceae	8	1	186814
family	Rhodocyclaceae	7	1	75787
family	Vibrionaceae	6	0	641
family	Xanthobacteraceae	6	1	335928
family	Alcaligenaceae	6	0	506
family	Aeromonadaceae	6	0	84642
family	Hyphomicrobiaceae	6	0	45401
family	Desulfovibrionaceae	5	0	194924
family	Hydrogenothermaceae	5	0	224027
family	Streptomycetaceae	5	0	2062
family	Leuconostocaceae	5	0	81850
family	Pasteurellaceae	5	2	712
family	Acetobacteraceae	5	0	433
family	Halomonadaceae	5	0	28256
family	Planococcaceae	4	0	186818
family	Desulfobacteraceae	4	2	213119
family	Chitinophagaceae	4	3	563835
family	Nocardiopsaceae	4	2	83676
family	Peptococcaceae	4	1	186807
family	Myxococcaceae	3	0	31
family	Thermotogaceae	3	0	188709
family	Cytophagaceae	3	1	89373
family	Bifidobacteriaceae	3	0	31953
family	Coriobacteriaceae	3	3	84107
family	Chromatiaceae	3	0	1046
family	Inoviridae	3	0	10860
family	Acidobacteriaceae	3	0	204434
family	Ectothiorhodospiraceae	3	0	72276
family	Chthonomonadaceae	3	0	1077264
family	Baculoviridae	3	0	10442
family	Spirochaetaceae	3	0	137
family	Aquificaceae	3	1	64898
family	Brucellaceae	3	0	118882
family	Flavobacteriaceae	2	0	49546
family	Shewanellaceae	2	0	267890
family	Thermoanaerobacterales Family III. Incertae Sedis	2	0	543371
family	Veillonellaceae	2	0	31977
family	Candidatus Midichloriaceae	2	0	1328881
family	Hyphomonadaceae	2	1	69657
family	Syntrophomonadaceae	2	0	68298
family	Francisellaceae	2	0	34064
family	Deferribacteraceae	2	1	191394
family	Polyangiaceae	2	0	49
family	Aerococcaceae	2	0	186827
family	Catenulisporaceae	2	0	414877
family	Erysipelotrichaceae	2	0	128827
family	Eubacteriaceae	2	0	186806
family	Ferrimonadaceae	2	0	267892
family	Sphingobacteriaceae	2	0	84566
family	Alcanivoracaceae	2	0	224372
family	Pseudoalteromonadaceae	1	0	267888
family	Rhodothermaceae	1	0	563843
family	Chlorobiaceae	1	0	191412
family	Acholeplasmataceae	1	0	2146
family	Thermaceae	1	0	188786
family	Legionellaceae	1	0	444
family	Microviridae	1	0	10841
family	Spiroplasmataceae	1	0	2131
family	Porphyromonadaceae	1	0	171551
family	Bartonellaceae	1	0	772
family	Geobacteraceae	1	0	213422
family	Erythrobacteraceae	1	0	335929
family	Dehalococcoidaceae	1	0	1202464
family	Dermacoccaceae	1	0	145357
family	Syntrophobacteraceae	1	0	213465
family	Nitrososphaeraceae	1	0	1033997
family	Kofleriaceae	1	0	224464
family	Planctomycetaceae	1	0	126
family	Intrasporangiaceae	1	0	85021
family	Desulfobulbaceae	1	0	213121
family	Nautiliaceae	1	0	224467
family	Micromonosporaceae	1	0	28056
family	Dictyoglomaceae	1	0	203488
family	Elusimicrobiaceae	1	0	641876
family	Pseudonocardiaceae	1	0	2070
family	Acidimicrobiaceae	1	0	84994
family	Alloherpesviridae	1	0	548682
family	Rubrobacteraceae	1	0	84997
family	Cellulomonadaceae	1	0	85016
family	Thermodesulfobacteriaceae	1	0	188711
family	Nitrospiraceae	1	0	189779
family	Entomoplasmataceae	1	0	33925
family	Promicromonosporaceae	1	0	85017
family	Thermomonosporaceae	1	0	2012
family	Parachlamydiaceae	1	0	92713
family	Anaerolineaceae	1	0	292628
family	Halanaerobiaceae	1	0	972
family	Beijerinckiaceae	1	0	45404
family	Oceanospirillaceae	1	0	135620
family	Clostridiales Family XVII. Incertae Sedis	1	0	539000
family	Chloroflexaceae	1	0	1106
family	Alicyclobacillaceae	1	0	186823
family	Methylococcaceae	1	0	403
family	Myoviridae	1	0	10662
family	Oxalobacteraceae	1	0	75682
subfamily	Azotobacter group	4	0	351
genus	Staphylococcus	2650889	241485	1279
genus	Rhodobacter	1352887	1347	1060
genus	Streptococcus	504552	11779	1301
genus	Methanobrevibacter	239638	278	2172
genus	Pseudomonas	132091	3856	286
genus	Escherichia	104912	5587	561
genus	Clostridium	76043	1378	1485
genus	Acinetobacter	26647	1220	469
genus	Bacillus	17407	44	1386
genus	Deinococcus	14862	112	1298
genus	Propionibacterium	12926	123	1743
genus	Neisseria	6975	2488	482
genus	Helicobacter	5720	244	209
genus	Listeria	4283	452	1637
genus	Stenotrophomonas	2943	0	40323
genus	Serratia	1428	68	613
genus	Bacteroides	1365	20	816
genus	Lactobacillus	395	19	1578
genus	Enterococcus	264	177	1350
genus	Shigella	237	18	620
genus	Rhodococcus	124	1	1827
genus	Enterobacter	80	5	547
genus	Salmonella	54	3	590
genus	Burkholderia	51	3	32008
genus	Citrobacter	48	1	544
genus	Xanthomonas	33	10	338
genus	Mycoplasma	31	1	2093
genus	Klebsiella	26	6	570
genus	Ralstonia	22	2	48736
genus	Paracoccus	22	1	265
genus	Methylobacterium	20	2	407
genus	Cronobacter	18	2	413496
genus	Corynebacterium	17	0	1716
genus	Sinorhizobium	16	2	28105
genus	Alteromonas	14	0	226
genus	Bradyrhizobium	14	3	374
genus	Dinoroseobacter	14	0	309512
genus	Cellulosilyticum	14	0	698776
genus	Mesorhizobium	12	3	68287
genus	Carnobacterium	12	3	2747
genus	Prevotella	12	0	838
genus	Azospirillum	11	0	191
genus	Pantoea	11	0	53335
genus	Agrobacterium	10	0	357
genus	Macrococcus	10	0	69965
genus	Ruegeria	9	0	97050
genus	Rhizobium	9	2	379
genus	Pseudoxanthomonas	8	1	83618
genus	Paenibacillus	8	3	44249
genus	Raoultella	7	0	160674
genus	Geobacillus	7	1	129337
genus	Yersinia	7	3	629
genus	Rahnella	7	5	34037
genus	Erwinia	6	2	551
genus	Dickeya	6	2	204037
genus	Leisingera	6	0	191028
genus	Lactococcus	6	0	1357
genus	Pectobacterium	6	3	122277
genus	Sphingobium	5	1	165695
genus	Phaeobacter	5	1	302485
genus	Amphibacillus	5	0	29331
genus	Shimwellia	5	0	1335483
genus	Caulobacter	5	2	75
genus	Melissococcus	5	0	33969
genus	Rhodopseudomonas	5	0	1073
genus	Sphingomonas	5	0	13687
genus	Persephonella	5	0	182899
genus	Variovorax	5	0	34072
genus	Vibrio	5	0	662
genus	Pediococcus	5	3	1253
genus	Desulfovibrio	5	2	872
genus	Solibacillus	4	0	648800
genus	Polymorphum	4	0	991903
genus	Thermoanaerobacter	4	0	1754
genus	Leuconostoc	4	0	1243
genus	Edwardsiella	4	1	635
genus	Morganella	4	0	581
genus	Candidatus Liberibacter	4	0	34019
genus	Streptomyces	4	0	1883
genus	Aeromonas	4	0	642
genus	Achromobacter	4	0	222
genus	Azotobacter	4	0	352
genus	Tetragenococcus	4	0	51668
genus	Pelagibacterium	3	0	1082930
genus	Frateuria	3	0	70411
genus	Cyanobacterium	3	2	102234
genus	Acidiphilium	3	2	522
genus	Inovirus	3	0	10861
genus	Roseobacter	3	0	2433
genus	Borrelia	3	2	138
genus	Comamonas	3	0	283
genus	Halomonas	3	0	2745
genus	Alphabaculovirus	3	0	558016
genus	Cupriavidus	3	0	106589
genus	Proteus	3	0	583
genus	Bifidobacterium	3	0	1678
genus	Terriglobus	3	0	392733
genus	Rhodospirillum	3	0	1081
genus	Chthonomonas	3	0	1077265
genus	Anaeromyxobacter	3	0	161492
genus	Tistrella	3	0	171436
genus	Thauera	3	0	33057
genus	Desulfotomaculum	3	0	1562
genus	Oceanobacillus	3	0	182709
genus	Phenylobacterium	3	0	20
genus	Nitrobacter	3	0	911
genus	Hyphomicrobium	3	0	81
genus	Brucella	3	0	234
genus	Starkeya	2	0	152053
genus	Sorangium	2	0	39643
genus	Brevundimonas	2	0	41275
genus	Francisella	2	0	262
genus	Azoarcus	2	0	12960
genus	Oceanimonas	2	0	129577
genus	Ketogulonicigenium	2	0	92944
genus	Sphingopyxis	2	0	165697
genus	Simiduia	2	0	447467
genus	Sphingobacterium	2	0	28453
genus	Jannaschia	2	0	188905
genus	Syntrophomonas	2	0	862
genus	Thermobifida	2	0	83677
genus	Lysinibacillus	2	0	400634
genus	Xenorhabdus	2	0	626
genus	Exiguobacterium	2	2	33986
genus	Haemophilus	2	1	724
genus	Aerococcus	2	0	1375
genus	Thioalkalivibrio	2	0	106633
genus	Eubacterium	2	0	1730
genus	Leptothrix	2	0	88
genus	Flavobacterium	2	0	237
genus	Alcanivorax	2	0	59753
genus	Ferrimonas	2	0	44011
genus	Fervidobacterium	2	0	2422
genus	Acidovorax	2	1	12916
genus	Wigglesworthia	2	0	51228
genus	Pandoraea	2	0	93217
genus	Candidatus Midichloria	2	0	411566
genus	Nitrosococcus	2	0	1227
genus	Azorhizobium	2	0	6
genus	Bordetella	2	2	517
genus	Shewanella	2	0	22
genus	Rhodanobacter	2	0	75309
genus	Asticcacaulis	2	0	76890
genus	Alkaliphilus	2	0	114627
genus	Chromohalobacter	2	0	42054
genus	Catenulispora	2	0	414878
genus	Aquifex	2	0	2713
genus	Marinobacter	1	0	2742
genus	Candidatus Zinderia	1	0	884214
genus	Methylomonas	1	0	416
genus	Anaerolinea	1	0	233189
genus	Filifactor	1	0	44259
genus	Geitlerinema	1	0	63132
genus	Chitinophaga	1	0	79328
genus	Haliangium	1	0	162027
genus	Marinomonas	1	1	28253
genus	Elusimicrobium	1	0	423604
genus	Psychrobacter	1	1	497
genus	Saccharopolyspora	1	0	1835
genus	Chlorobium	1	0	1091
genus	Cytophaga	1	0	978
genus	Candidatus Blochmannia	1	0	203804
genus	Dictyoglomus	1	1	13
genus	Acidimicrobium	1	0	53634
genus	Candidatus Profftella	1	0	1381133
genus	Intrasporangium	1	0	53357
genus	Parachlamydia	1	0	83551
genus	Pseudovibrio	1	0	258255
genus	Brevibacillus	1	0	55080
genus	Candidatus Saccharimonas	1	0	1331051
genus	Aggregatibacter	1	0	416916
genus	Caldicellulosiruptor	1	0	44000
genus	Spiribacter	1	0	1335745
genus	Chromobacterium	1	0	535
genus	Deferribacter	1	0	53572
genus	Rubrobacter	1	0	42255
genus	Syntrophobacter	1	0	29526
genus	Salinibacter	1	0	146918
genus	Kosmotoga	1	0	651456
genus	Gloeobacter	1	0	33071
genus	Mesoplasma	1	0	46239
genus	Candidatus Phytoplasma	1	0	33926
genus	Candidatus Cardinium	1	0	273135
genus	Bartonella	1	0	773
genus	Polaromonas	1	0	52972
genus	Maricaulis	1	0	74317
genus	Photobacterium	1	0	657
genus	Desulfococcus	1	0	896
genus	Xanthobacter	1	0	279
genus	Desulfobacula	1	0	28222
genus	Roseiflexus	1	0	120961
genus	Synechococcus	1	1	1129
genus	Glaciecola	1	0	89404
genus	Gluconobacter	1	0	441
genus	Erysipelothrix	1	0	1647
genus	Thermoanaerobacterium	1	0	28895
genus	Desulfotalea	1	0	109168
genus	Ramlibacter	1	0	174951
genus	Halobacillus	1	0	45667
genus	Spiroplasma	1	1	2132
genus	Nocardia	1	0	1817
genus	Candidatus Chloracidobacterium	1	0	458032
genus	Micavibrio	1	0	213485
genus	Nitrososphaera	1	0	497726
genus	Veillonella	1	0	29465
genus	Nautilia	1	0	191291
genus	Halanaerobium	1	0	2330
genus	Thermomonospora	1	0	2019
genus	Geobacter	1	0	28231
genus	Thermacetogenium	1	0	140458
genus	Gluconacetobacter	1	0	89583
genus	Actinoplanes	1	0	1865
genus	Prochlorococcus	1	0	1218
genus	Erythrobacter	1	0	1041
genus	Alicycliphilus	1	0	201096
genus	Thermus	1	1	270
genus	Megasphaera	1	0	906
genus	Odoribacter	1	0	283168
genus	Magnetospirillum	1	0	13134
genus	Microvirus	1	0	10842
genus	Sulfuricurvum	1	0	286130
genus	Methylibium	1	0	316612
genus	Moraxella	1	0	475
genus	Moorella	1	0	44260
genus	Chelativorans	1	0	449972
genus	Methanobacterium	1	0	2160
genus	Nitrospira	1	0	1234
genus	Kitasatospora	1	0	2063
genus	Carboxydothermus	1	0	129957
genus	Weissella	1	0	46255
genus	Runella	1	0	105
genus	Azospira	1	0	146937
genus	Pseudoalteromonas	1	0	53246
genus	Planctomyces	1	0	118
genus	Methylocella	1	0	120652
genus	Thermodesulfobacterium	1	0	1740
genus	Kytococcus	1	0	57499
genus	Xylanimonas	1	0	186188
genus	Sulfobacillus	1	0	28033
genus	Cellulomonas	1	0	1707
genus	Dehalococcoides	1	0	61434
genus	Anoxybacillus	1	0	150247
genus	Buchnera	1	0	32199
genus	Legionella	1	0	445
genus	Cyprinivirus	1	0	692606
genus	Alicyclobacillus	1	0	29330
genus	Thermobacillus	1	0	76632
genus	Thioflavicoccus	1	0	156885
subgenus	Branhamella	1	0	46226
species group	Pseudomonas aeruginosa group	128169	703	136841
species group	Acinetobacter calcoaceticus/baumannii complex	25426	899	909768
species group	Bacillus cereus group	17334	8643	86661
species group	Enterobacter cloacae complex	57	4	354276
species group	pseudomallei group	40	1	111527
species group	Pseudomonas putida group	26	5	136845
species group	Pseudomonas stutzeri group	14	0	136846
species group	Streptococcus anginosus group	13	2	671232
species group	Bacillus subtilis group	12	0	653685
species group	Pseudomonas fluorescens group	8	0	136843
species group	Pseudomonas pertucinogena group	7	0	136844
species group	Agrobacterium tumefaciens complex	4	0	1183400
species group	Burkholderia cepacia complex	3	0	87882
species group	Streptococcus dysgalactiae group	3	0	119603
species group	Methylobacterium extorquens group	2	0	578822
species group	16SrXII (Stolbur group)	1	0	85632
species group	Pseudomonas syringae group	1	0	136849
species subgroup	Pseudomonas stutzeri subgroup	14	0	578833
species subgroup	Pseudomonas syringae group genomosp. 1	1	0	251695
species	Rhodobacter sphaeroides	1351518	825175	1063
species	Staphylococcus aureus	1289698	1188729	1280
species	Staphylococcus epidermidis	1117814	792293	1282
species	Streptococcus mutans	465922	415277	1309
species	Methanobrevibacter smithii	239357	0	2173
species	Pseudomonas aeruginosa	127452	120244	287
species	Escherichia coli	99233	97992	562
species	Clostridium beijerinckii	74652	0	1520
species	Streptococcus agalactiae	26205	23859	1311
species	Acinetobacter baumannii	24523	17985	470
species	Deinococcus radiodurans	14747	0	1299
species	Propionibacterium acnes	12801	12729	1747
species	Bacillus cereus	8659	4828	1396
species	Helicobacter pylori	5473	5462	210
species	Neisseria meningitidis	4473	3939	487
species	Listeria monocytogenes	3828	3771	1639
species	Stenotrophomonas maltophilia	2943	1322	40324
species	Bacteroides vulgatus	1345	0	821
species	Serratia marcescens	1342	10	615
species	Staphylococcus aureus subsp. aureus MSHR1132	1198	1198	985002
species	Staphylococcus warneri	1077	0	1292
species	Staphylococcus haemolyticus	626	0	1283
species	Lactobacillus gasseri	350	0	1596
species	Staphylococcus phage 53 sensu lato	328	22	386445
species	Streptococcus pneumoniae	307	286	1313
species	Streptococcus suis	300	7	1307
species	Staphylococcus phage phiETA3	207	207	326037
species	Staphylococcus phage phiETA	152	152	106284
species	Rhodococcus erythropolis	123	85	1833
species	Staphylococcus phage 29	109	109	320846
species	Escherichia fergusonii	92	0	564
species	Staphylococcus phage X2	87	87	320850
species	Enterococcus faecalis	83	53	1351
species	Staphylococcus pasteuri	76	0	45972
species	Staphylococcus lugdunensis	72	69	28035
species	Shigella dysenteriae	71	0	622
species	Staphylococcus phage 85	65	65	59506
species	Shigella flexneri	65	52	623
species	Shigella boydii	52	13	621
species	Staphylococcus phage 69	43	43	320834
species	Salmonella enterica	42	6	28901
species	Pseudomonas phage D3112	41	41	10708
species	Burkholderia mallei	39	35	13373
species	Enterobacter cloacae	36	9	550
species	Staphylococcus phage phiETA2	32	32	326036
species	Shigella sonnei	31	21	624
species	Citrobacter rodentium	25	0	67825
species	Bacillus thuringiensis	24	2	1428
species	Mycoplasma hyopneumoniae	24	0	2099
species	Staphylococcus phage tp310-2	23	23	445516
species	Rhodobacter capsulatus	22	0	1061
species	Citrobacter koseri	22	0	545
species	Pseudomonas putida	19	9	303
species	Staphylococcus carnosus	18	0	1281
species	Ralstonia pickettii	17	7	329
species	Paracoccus denitrificans	16	0	266
species	Xanthomonas campestris	16	9	339
species	Staphylococcus pseudintermedius	14	14	283734
species	Cellulosilyticum lentocellum	14	0	29360
species	Dinoroseobacter shibae	14	0	215813
species	Pseudomonas stutzeri	14	5	316
species	Enterobacteriaceae bacterium strain FGI 57	14	14	693444
species	Alteromonas sp. SN2	13	13	715451
species	Corynebacterium glutamicum	12	11	1718
species	Klebsiella oxytoca	11	7	571
species	Enterobacter lignolyticus	11	0	1334193
species	Prevotella dentalis	11	0	52227
species	Pseudomonas mendocina	10	0	300
species	Neisseria gonorrhoeae	10	5	485
species	Macrococcus caseolyticus	10	0	69966
species	Cronobacter sakazakii	10	5	28141
species	Salmonella bongori	9	8	54736
species	Serratia liquefaciens	9	0	614
species	Staphylococcus saprophyticus	9	0	29385
species	Carnobacterium maltaromaticum	9	0	2751
species	Enterobacter sp. R4-368	9	9	1166130
species	Bacillus pumilus	9	0	1408
species	Lactobacillus acidophilus	8	0	1579
species	Enterobacter aerogenes	7	4	548
species	Pseudomonas denitrificans	7	0	43306
species	Raoultella ornithinolytica	7	0	54291
species	Klebsiella pneumoniae	7	5	573
species	Ruegeria pomeroyi	7	0	89184
species	Pantoea sp. At-9b	6	6	592316
species	Bacillus amyloliquefaciens	6	0	1390
species	Leisingera methylohalidivorans	6	0	133924
species	Agrobacterium vitis	6	0	373
species	candidate division SR1 bacterium RAAC1_SR1_1	6	6	1394709
species	Enterobacter asburiae	6	0	61645
species	Cronobacter turicensis	6	0	413502
species	Serratia proteamaculans	6	0	28151
species	Azospirillum brasilense	6	0	192
species	Sinorhizobium fredii	6	0	380
species	Rhodopseudomonas palustris	5	0	1076
species	Paracoccus aminophilus	5	0	34003
species	Shimwellia blattae	5	0	563
species	Azospirillum lipoferum	5	0	193
species	Variovorax paradoxus	5	1	34073
species	Persephonella marina	5	0	309805
species	Xanthomonas oryzae	5	5	347
species	Lactobacillus reuteri	5	3	1598
species	Streptococcus thermophilus	5	3	1308
species	Vibrio cholerae	5	1	666
species	Amphibacillus xylanus	5	0	1449
species	Methylobacterium nodulans	5	0	114616
species	Melissococcus plutonius	5	3	33970
species	Bacillus subtilis	5	3	1423
species	Streptococcus intermedius	5	2	1338
species	Mesorhizobium ciceri	4	0	39645
species	Acinetobacter calcoaceticus	4	0	471
species	Rhizobium etli	4	3	29449
species	Pseudoxanthomonas spadix	4	0	415229
species	Lactobacillus plantarum	4	0	1590
species	Methylobacterium sp. 4-46	4	4	426117
species	Solibacillus silvestris	4	0	76853
species	Morganella morganii	4	0	582
species	Streptococcus anginosus	4	1	1328
species	Azotobacter vinelandii	4	4	354
species	Corynebacterium jeikeium	4	0	38289
species	Candidatus Liberibacter asiaticus	4	0	34021
species	Methylobacterium radiotolerans	4	0	31998
species	Bacillus weihenstephanensis	4	0	86662
species	[Clostridium] difficile	4	1	1496
species	Polymorphum gilvum	4	0	991904
species	Streptococcus parasanguinis	4	0	1318
species	Sinorhizobium meliloti	4	1	382
species	Dickeya dadantii	4	0	204038
species	Tetragenococcus halophilus	4	0	51669
species	Achromobacter xylosoxidans	4	3	85698
species	Paenibacillus mucilaginosus	4	0	61624
species	Pseudomonas protegens	4	1	380021
species	Bacillus cytotoxicus	4	0	580165
species	Thermoanaerobacter wiegelii	4	0	46354
species	Pseudomonas fluorescens	4	0	294
species	Mesorhizobium opportunistum	4	0	593909
species	Phaeobacter gallaeciensis	4	0	60890
species	Sinorhizobium medicae	4	0	110321
species	Neisseria lactamica	4	0	486
species	Bradyrhizobium sp. BTAi1	4	4	288000
species	Pseudomonas resinovorans	4	0	53412
species	Sphingomonas sp. MM-1	4	4	745310
species	Pantoea vagans	4	0	470934
species	Pseudomonas sp. UW4	3	3	1207075
species	Sphingobium chlorophenolicum	3	0	46429
species	Bradyrhizobium oligotrophicum	3	0	44255
species	Ralstonia solanacearum	3	3	305
species	Rhodospirillum rubrum	3	3	1085
species	Aeromonas hydrophila	3	0	644
species	Desulfotomaculum gibsoniae	3	0	102134
species	Frateuria aurantia	3	0	81475
species	Methylobacterium populi	3	0	223967
species	Edwardsiella tarda	3	2	636
species	Serratia plymuthica	3	1	82996
species	Chthonomonas calidirosea	3	0	454171
species	Terriglobus roseus	3	0	392734
species	Thauera sp. MZ1T	3	3	85643
species	Pseudoxanthomonas suwonensis	3	0	314722
species	Phenylobacterium zucineum	3	0	284016
species	Proteus mirabilis	3	3	584
species	Yersinia enterocolitica	3	2	630
species	Streptococcus pyogenes	3	2	1314
species	Tistrella mobilis	3	0	171437
species	Lactococcus lactis	3	3	1358
species	Halomonas elongata	3	0	2746
species	Oceanobacillus iheyensis	3	0	182710
species	Lactococcus garvieae	3	3	1363
species	Pseudomonas phage Pf1	3	3	10871
species	Pseudomonas brassicacearum	3	0	930166
species	Brucella melitensis	3	0	29459
species	Agrobacterium tumefaciens	3	0	358
species	Streptococcus equi	3	2	1336
species	Maruca vitrata nucleopolyhedrovirus	3	3	1307954
species	Comamonas testosteroni	3	0	285
species	Pelagibacterium halotolerans	3	0	531813
species	Clostridium botulinum	3	1	1491
species	Sorangium cellulosum	2	0	56
species	Chromohalobacter salexigens	2	0	158080
species	Azoarcus sp. KH32C	2	2	748247
species	Cupriavidus taiwanensis	2	0	164546
species	Candidatus Midichloria mitochondrii	2	0	234827
species	Enterococcus faecium	2	1	1352
species	Streptococcus sanguinis	2	0	1305
species	Nitrosococcus halophilus	2	0	133539
species	Ketogulonicigenium vulgare	2	2	92945
species	Brevundimonas subvibrioides	2	0	74313
species	Simiduia agarivorans	2	0	447471
species	Bacillus infantis	2	0	324767
species	Methanobrevibacter ruminantium	2	0	83816
species	Listeria innocua	2	0	1642
species	Oceanimonas sp. GK1	2	2	511062
species	Bradyrhizobium sp. S23321	2	2	335659
species	Clostridium saccharoperbutylacetonicum	2	0	36745
species	Geobacillus thermoglucosidasius	2	0	1426
species	Syntrophomonas wolfei	2	0	863
species	Streptococcus gordonii	2	0	1302
species	Sphingopyxis alaskensis	2	0	117207
species	Lactobacillus delbrueckii	2	0	1584
species	Ferrimonas balearica	2	0	44012
species	Starkeya novella	2	0	921
species	Geobacillus sp. GHH01	2	2	1233873
species	Xanthomonas albilineans	2	0	29447
species	Methylobacterium extorquens	2	0	408
species	Rhizobium leguminosarum	2	2	384
species	Geobacillus thermodenitrificans	2	0	33940
species	Bacillus megaterium	2	0	1404
species	Clostridium kluyveri	2	2	1534
species	Lactobacillus salivarius	2	2	1624
species	Staphylococcus prophage phiPV83	2	2	129009
species	Thermobifida fusca	2	0	2021
species	Propionibacterium avidum	2	0	33010
species	Hyphomicrobium nitrativorans	2	0	1427356
species	Rhodanobacter denitrificans	2	2	666685
species	Pectobacterium atrosepticum	2	0	29471
species	Enterobacter sp. 638	2	2	399742
species	Asticcacaulis excentricus	2	0	78587
species	Caulobacter sp. K31	2	2	366602
species	Fervidobacterium nodosum	2	0	2424
species	Erwinia pyrifoliae	2	1	79967
species	Streptococcus constellatus	2	0	76860
species	Lactobacillus fermentum	2	2	1613
species	Catenulispora acidiphila	2	0	304895
species	Ruegeria sp. TM1040	2	2	292414
species	Thioalkalivibrio sp. K90mix	2	2	396595
species	Leptothrix cholodnii	2	0	34029
species	Clostridium acidurici	2	0	1556
species	Aerococcus urinae	2	0	1376
species	Pseudomonas sp. VLB120	2	2	69328
species	Sphingobacterium sp. 21	2	2	743722
species	Roseobacter denitrificans	2	0	2434
species	Jannaschia sp. CCS1	2	2	290400
species	Lysinibacillus sphaericus	2	0	1421
species	Enterococcus casseliflavus	2	0	37734
species	Rahnella aquatilis	2	0	34038
species	Clostridium acetobutylicum	2	2	1488
species	Aquifex aeolicus	2	0	63363
species	Erwinia tasmaniensis	2	0	338565
species	Anaeromyxobacter sp. Fw109-5	2	2	404589
species	Flavobacterium johnsoniae	2	0	986
species	Streptococcus iniae	2	0	1346
species	Lactobacillus johnsonii	2	1	33959
species	Nitrobacter hamburgensis	2	0	912
species	Pseudomonas fulva	2	0	47880
species	Wigglesworthia glossinidia	2	0	51229
species	Azorhizobium caulinodans	2	0	7
species	Streptomyces cattleya	2	0	29303
species	Xenorhabdus nematophila	2	0	628
species	Klebsiella variicola	2	0	244366
species	Thermodesulfobacterium geofontis	1	0	1295609
species	Eubacterium rectale	1	0	39491
species	Legionella pneumophila	1	1	446
species	Polaromonas naphthalenivorans	1	0	216465
species	Methanobacterium sp. MB1	1	1	1379702
species	Bacillus clausii	1	0	79880
species	Bifidobacterium thermophilum	1	0	33905
species	Yersinia pseudotuberculosis	1	0	633
species	Thioflavicoccus mobilis	1	0	80679
species	Erysipelothrix rhusiopathiae	1	0	1648
species	Thermoanaerobacterium saccharolyticum	1	0	28896
species	Caldicellulosiruptor obsidiansis	1	0	717609
species	Albidiferax ferrireducens	1	0	192843
species	Staphylococcus phage phiPVL-CN125	1	1	648017
species	Halanaerobium hydrogeniformans	1	1	656519
species	Pediococcus pentosaceus	1	1	1255
species	Moorella thermoacetica	1	0	1525
species	Burkholderia cenocepacia	1	0	95486
species	Bifidobacterium bifidum	1	1	1681
species	Pectobacterium carotovorum	1	0	554
species	Staphylococcus phage 187	1	1	55511
species	Pseudomonas sp. TKP	1	1	1415630
species	Gluconacetobacter diazotrophicus	1	0	33996
species	Enterobacteria phage SfV	1	1	55884
species	Pseudovibrio sp. FO-BEG1	1	1	911045
species	Azospira oryzae	1	0	146939
species	Methylibium petroleiphilum	1	0	105560
species	Halobacillus halophilus	1	0	1570
species	Nitrobacter winogradskyi	1	0	913
species	Alkaliphilus metalliredigens	1	0	208226
species	Micavibrio aeruginosavorus	1	1	349221
species	Acidovorax avenae	1	0	80867
species	Parachlamydia acanthamoebae	1	0	83552
species	Streptococcus parauberis	1	0	1348
species	Haliangium ochraceum	1	0	80816
species	Cyprinid herpesvirus 3	1	1	180230
species	Spiribacter salinus	1	0	1335746
species	Sphingobium sp. SYK-6	1	1	627192
species	Chlorobium limicola	1	0	1092
species	Streptococcus salivarius	1	0	1304
species	Lactobacillus ruminis	1	0	1623
species	Kytococcus sedentarius	1	0	1276
species	Acidimicrobium ferrooxidans	1	0	53635
species	Desulfotalea psychrophila	1	0	84980
species	Aeromonas salmonicida	1	0	645
species	Leuconostoc kimchii	1	0	136609
species	Pediococcus claussenii	1	0	187452
species	Intrasporangium calvum	1	0	53358
species	Kitasatospora setae	1	0	2066
species	Staphylococcus phage P954	1	1	668618
species	[Eubacterium] cylindroides	1	0	39483
species	Saccharopolyspora erythraea	1	0	1836
species	Alteromonas macleodii	1	0	28108
species	Roseiflexus sp. RS-1	1	1	357808
species	Prochlorococcus marinus	1	0	1219
species	Cyanobacterium aponinum	1	0	379064
species	Burkholderia gladioli	1	0	28095
species	Candidatus Profftella armatura	1	1	669502
species	Maricaulis maris	1	0	74318
species	Odoribacter splanchnicus	1	0	28118
species	Leuconostoc mesenteroides	1	0	1245
species	Bifidobacterium dentium	1	0	1689
species	Pantoea ananatis	1	1	553
species	Gluconobacter oxydans	1	0	442
species	Alcanivorax borkumensis	1	0	59754
species	Elusimicrobium minutum	1	0	423605
species	Chromobacterium violaceum	1	0	536
species	Helicobacter mustelae	1	0	217
species	Desulfococcus oleovorans	1	0	181663
species	Salinibacter ruber	1	1	146919
species	Desulfovibrio desulfuricans	1	0	876
species	Filifactor alocis	1	0	143361
species	Candidatus Nitrospira defluvii	1	1	330214
species	Planctomyces brasiliensis	1	0	119
species	Ramlibacter tataouinensis	1	0	94132
species	Marinobacter sp. BSs20148	1	1	490759
species	Erythrobacter litoralis	1	0	39960
species	Leuconostoc citreum	1	0	33964
species	Thermacetogenium phaeum	1	0	85874
species	Mycoplasma arthritidis	1	0	2111
species	Bradyrhizobium sp. ORS 278	1	1	114615
species	Brevibacillus brevis	1	0	1393
species	Methylomonas methanica	1	0	421
species	Shewanella denitrificans	1	0	192073
species	Deinococcus peraridilitoris	1	0	432329
species	Enterobacteria phage phiX174 sensu lato	1	1	374840
species	Chitinophaga pinensis	1	0	79329
species	Haemophilus influenzae	1	1	727
species	Bacillus sp. JS	1	1	1127744
species	Staphylococcus phage 96	1	1	320842
species	Mycoplasma crocodyli	1	0	50052
species	Mycoplasma mobile	1	0	2118
species	Streptococcus sp. I-P16	1	1	1156433
species	Xanthobacter autotrophicus	1	0	280
species	Mesorhizobium australicum	1	0	536018
species	Burkholderia phymatum	1	0	148447
species	Cellulomonas flavigena	1	0	1711
species	alpha proteobacterium HIMB59	1	1	744985
species	Mycoplasma pulmonis	1	0	2107
species	Sulfobacillus acidophilus	1	1	53633
species	Kosmotoga olearia	1	0	651457
species	Thermomonospora curvata	1	0	2020
species	Borrelia recurrentis	1	0	44449
species	Agrobacterium fabrum	1	0	1176649
species	Megasphaera elsdenii	1	0	907
species	Glaciecola nitratireducens	1	0	300231
species	Veillonella parvula	1	0	29466
species	Prevotella melaninogenica	1	0	28132
species	Streptococcus mitis	1	0	28037
species	Methylocella silvestris	1	0	199596
species	Buchnera aphidicola	1	0	9
species	Paenibacillus sp. JDR-2	1	1	324057
species	Rhizobium tropici	1	0	398
species	Nautilia profundicola	1	0	244787
species	Sphingomonas wittichii	1	0	160791
species	Shewanella amazonensis	1	0	60478
species	Geobacter sulfurreducens	1	1	35554
species	Gloeobacter kilaueensis	1	0	1416614
species	Candidatus Chloracidobacterium thermophilum	1	0	458033
species	Alicycliphilus denitrificans	1	0	179636
species	Carboxydothermus hydrogenoformans	1	0	129958
species	Helicobacter cetorum	1	1	138563
species	Syntrophobacter fumaroxidans	1	0	119484
species	Bartonella clarridgeiae	1	0	56426
species	Thermobacillus composti	1	0	377615
species	Desulfovibrio magneticus	1	0	184917
species	Burkholderia sp. YI23	1	1	1097668
species	Streptococcus uberis	1	0	1349
species	Corynebacterium variabile	1	0	1727
species	Weissella koreensis	1	0	165096
species	Chelativorans sp. BNC1	1	1	266779
species	Pseudomonas syringae	1	0	317
species	Burkholderia sp. CCGE1002	1	1	640511
species	Xylanimonas cellulosilytica	1	0	186189
species	Cytophaga hutchinsonii	1	0	985
species	Candidatus Blochmannia vafer	1	0	251535
species	Streptomyces sp. SirexAA-E	1	1	862751
species	Acinetobacter sp. ADP1	1	1	62977
species	Anaerolinea thermophila	1	0	167964
species	Cardinium endosymbiont of Encarsia pergandiella	1	0	249402
species	Rubrobacter xylanophilus	1	0	49319
species	Anoxybacillus flavithermus	1	0	33934
species	Anaeromyxobacter dehalogenans	1	0	161493
species	Photobacterium profundum	1	0	74109
species	Pseudomonas entomophila	1	0	312306
species	Alicyclobacillus acidocaldarius	1	0	405212
species	uncultured Sulfuricurvum sp. RIFRC-1	1	1	1249480
species	Candidatus Zinderia insecticola	1	0	884215
species	Dehalococcoides mccartyi	1	1	61435
species	Nocardia cyriacigeorgica	1	0	135487
species	Mycoplasma synoviae	1	0	2109
species	Burkholderia lata	1	1	482957
species	Mycoplasma agalactiae	1	0	2110
species	Burkholderia ambifaria	1	0	152480
species	Staphylococcus phage tp310-3	1	1	445517
species	Halyomorpha halys symbiont	1	1	1235990
species	Alcanivorax dieselolei	1	0	285091
species	Alkaliphilus oremlandii	1	0	461876
species	Calyptogena okutanii thioautotrophic gill symbiont	1	0	410330
species	Deinococcus proteolyticus	1	0	55148
species	Helicobacter acinonychis	1	0	212
species	Candidatus Nitrososphaera gargensis	1	0	497727
species	Burkholderia rhizoxinica	1	0	412963
species	Desulfobacula toluolica	1	0	28223
species	Acidiphilium multivorum	1	0	62140
species	Desulfovibrio salexigens	1	0	880
species	Eubacterium siraeum	1	0	39492
species	Francisella tularensis	1	1	263
species	Moraxella catarrhalis	1	0	480
species	Cupriavidus metallidurans	1	0	119219
species	Aggregatibacter actinomycetemcomitans	1	1	714
species	Staphylococcus phage 71	1	1	320844
species	Magnetospirillum gryphiswaldense	1	0	55518
species	Streptomyces coelicolor	1	0	1902
species	Hyphomicrobium denitrificans	1	0	53399
species	Deferribacter desulfuricans	1	0	197162
species	Deinococcus gobiensis	1	0	502394
species	Bacillus halodurans	1	0	86665
species	Geitlerinema sp. PCC 7407	1	1	1173025
species	Caulobacter vibrioides	1	0	155892
species	Francisella philomiragia	1	0	28110
species	Pseudoalteromonas haloplanktis	1	0	228
species	Mesoplasma florum	1	1	2151
species	Listeria welshimeri	1	0	1643
species	Candidatus Phytoplasma australiense	1	1	59748
species	Actinoplanes missouriensis	1	0	1866
species	Roseobacter litoralis	1	0	42443
species	Bacillus coagulans	1	1	1398
species	Methanobrevibacter sp. AbM4	1	1	224719
species	Bacillus licheniformis	1	0	1402
species	Runella slithyformis	1	0	106
species	Bradyrhizobium japonicum	1	0	375
species	Candidatus Saccharimonas aalborgensis	1	1	1332188
species	Pseudomonas phage MP29	1	1	505291
species	Clostridium tetani	1	0	1513
species	Clostridium pasteurianum	1	0	1501
subspecies	Staphylococcus aureus subsp. aureus	97951	62509	46170
subspecies	Salmonella enterica subsp. enterica	26	11	59201
subspecies	Enterobacter cloacae subsp. cloacae	20	0	336306
subspecies	Staphylococcus carnosus subsp. carnosus	18	0	147448
subspecies	Salmonella enterica subsp. arizonae	10	0	59203
subspecies	Staphylococcus saprophyticus subsp. saprophyticus	9	0	147452
subspecies	Enterobacter cloacae subsp. dissolvens	5	0	69219
subspecies	Morganella morganii subsp. morganii	4	0	180434
subspecies	Pseudomonas brassicacearum subsp. brassicacearum	3	0	86264
subspecies	Syntrophomonas wolfei subsp. wolfei	2	0	370885
subspecies	Lactobacillus delbrueckii subsp. bulgaricus	2	2	1585
subspecies	Streptococcus constellatus subsp. pharyngis	2	1	184250
subspecies	Aeromonas salmonicida subsp. salmonicida	1	0	29491
subspecies	Desulfovibrio desulfuricans subsp. desulfuricans	1	0	115117
subspecies	Acidovorax avenae subsp. avenae	1	0	80870
subspecies	Yersinia enterocolitica subsp. enterocolitica	1	0	150052
subspecies	Pectobacterium carotovorum subsp. carotovorum	1	0	555
subspecies	Lactobacillus plantarum subsp. plantarum	1	0	337330
subspecies	Streptococcus equi subsp. zooepidemicus	1	0	40041
subspecies	Leuconostoc gasicomitatum	1	0	115778
subspecies	Leuconostoc mesenteroides subsp. mesenteroides	1	0	33967
subspecies	Alicyclobacillus acidocaldarius subsp. acidocaldarius	1	1	1388
subspecies	Klebsiella pneumoniae subsp. pneumoniae	1	1	72407
strain	Rhodobacter sphaeroides 2.4.1	524734	524734	272943
strain	Staphylococcus epidermidis ATCC 12228	324660	324660	176280
strain	Methanobrevibacter smithii ATCC 35061	239357	239357	420247
strain	Clostridium beijerinckii NCIMB 8052	74652	74652	290402
strain	Streptococcus mutans UA159	50505	50505	210007
strain	Deinococcus radiodurans R1	14747	14747	243230
strain	Actinobacteridae	13119	5	85003
strain	Staphylococcus aureus subsp. aureus CN1	10752	10752	1193576
strain	Pseudomonas aeruginosa PAO1	6860	6860	208964
strain	Staphylococcus aureus subsp. aureus 11819-97	6573	6573	1123523
strain	Acinetobacter baumannii ATCC 17978	6476	6476	400667
strain	Staphylococcus aureus subsp. aureus JKD6159	5581	5581	869816
strain	Bacillus cereus ATCC 10987	3805	3805	222523
strain	Staphylococcus aureus subsp. aureus ED133	3403	3403	685039
strain	Staphylococcus aureus subsp. aureus HO 5096 0412	3370	3370	1074252
strain	Streptococcus agalactiae 2603V/R	2316	2316	208435
strain	Staphylococcus aureus subsp. aureus 6850	1409	1409	1392476
strain	Staphylococcus aureus CA-347	1398	1398	1323661
strain	Bacteroides vulgatus ATCC 8482	1345	1345	435590
strain	Serratia marcescens WW4	1316	1316	435998
strain	Staphylococcus warneri SG1	1077	1077	1194526
strain	Staphylococcus aureus RF122	949	949	273036
strain	Stenotrophomonas maltophilia K279a	915	915	522373
strain	Escherichia coli K-12	908	906	83333
strain	Staphylococcus aureus subsp. aureus LGA251	865	865	985006
strain	Staphylococcus epidermidis RP62A	861	861	176279
strain	Staphylococcus aureus subsp. aureus MRSA252	724	724	282458
strain	Rhodobacter sphaeroides KD131	713	713	557760
strain	Staphylococcus haemolyticus JCSC1435	626	626	279808
strain	Rhodobacter sphaeroides ATCC 17029	625	625	349101
strain	Staphylococcus aureus Bmb9393	592	592	1321369
strain	Neisseria meningitidis serogroup B	534	475	491
strain	Staphylococcus aureus subsp. aureus ED98	455	455	681288
strain	Lactobacillus gasseri ATCC 33323	350	350	324831
strain	Staphylococcus aureus subsp. aureus VC40	291	291	1028799
strain	Streptococcus suis JS14	275	275	945704
strain	Rhodobacter sphaeroides ATCC 17025	271	271	349102
strain	Staphylococcus aureus subsp. aureus str. JKD6008	251	251	546342
strain	Stenotrophomonas maltophilia JV3	247	247	868597
strain	Stenotrophomonas maltophilia D457	236	236	1163399
strain	Stenotrophomonas maltophilia R551-3	223	223	391008
strain	Staphylococcus aureus subsp. aureus USA300	196	187	367830
strain	Pseudomonas aeruginosa B136-33	164	164	1280938
strain	Staphylococcus aureus subsp. aureus MSSA476	151	151	282459
strain	Escherichia fergusonii ATCC 35469	92	92	585054
strain	Pseudomonas aeruginosa PA7	79	79	381754
strain	Staphylococcus pasteuri SP1	76	76	1276282
strain	Shigella dysenteriae Sd197	71	71	300267
strain	Propionibacterium acnes KPA171202	60	60	267747
strain	Neisseria meningitidis MC58	59	59	122586
strain	Staphylococcus aureus 08BA02176	53	53	1229492
strain	Listeria monocytogenes EGD-e	52	52	169963
strain	Pseudomonas aeruginosa M18	50	50	941193
strain	Streptococcus mutans LJ23	50	50	1155071
strain	Streptococcus mutans GS-5	47	47	1198676
strain	Staphylococcus aureus subsp. aureus MW2	46	46	196620
strain	Escherichia coli 042	45	45	216592
strain	Streptococcus mutans NN2025	43	43	511691
strain	Staphylococcus aureus subsp. aureus TCH60	35	35	548473
strain	Escherichia coli O127:H6 str. E2348/69	34	34	574521
strain	Staphylococcus aureus subsp. aureus COL	33	33	93062
strain	Escherichia coli SMS-3-5	33	33	439855
strain	Staphylococcus aureus subsp. aureus str. Newman	31	31	426430
strain	Acinetobacter baumannii BJAB0715	31	31	1096996
strain	Escherichia coli UMN026	30	30	585056
strain	Staphylococcus aureus subsp. aureus ST228	30	30	1074919
strain	Enterococcus faecalis OG1RF	30	30	474186
strain	Citrobacter rodentium ICC168	25	25	637910
strain	Streptococcus agalactiae ILRI005	24	24	1309807
strain	Staphylococcus aureus M1	24	24	1305598
strain	Rhodobacter capsulatus SB 1003	22	22	272942
strain	Citrobacter koseri ATCC BAA-895	22	22	290338
strain	Rhodococcus erythropolis PR4	22	22	234621
strain	Streptococcus pneumoniae TIGR4	20	20	170187
strain	Shigella boydii CDC 3083-94	20	20	344609
strain	Shigella boydii Sb227	19	19	300268
strain	Staphylococcus carnosus subsp. carnosus TM300	18	18	396513
strain	Mycoplasma hyopneumoniae J	17	17	262719
strain	Escherichia coli APEC O78	16	16	1274814
strain	Paracoccus denitrificans PD1222	16	16	318586
strain	Serratia marcescens FGI94	16	16	1249634
strain	Escherichia coli HS	16	16	331112
strain	Rhodococcus erythropolis CCM2595	16	16	1136179
strain	Bacillus cereus FRI-35	15	15	1217984
strain	Clostridium lentocellum DSM 5427	14	14	642492
strain	Dinoroseobacter shibae DFL 12 = DSM 16493	14	14	398580
strain	Escherichia coli 536	13	13	362663
strain	Escherichia coli E24377A	13	13	331111
strain	Staphylococcus aureus subsp. aureus M013	13	13	1118959
strain	Pseudomonas aeruginosa SCV20265	12	12	1427342
strain	Escherichia coli SE15	12	12	431946
strain	Pseudomonas aeruginosa MTB-1	12	12	1415629
strain	Propionibacterium acnes ATCC 11828	12	12	1091045
strain	Bacillus thuringiensis MC28	12	12	1195464
strain	Escherichia coli ETEC H10407	11	11	316401
strain	Pseudomonas aeruginosa UCBPP-PA14	11	11	208963
strain	Prevotella dentalis DSM 3688	11	11	908937
strain	Enterobacter lignolyticus SCF1	11	11	701347
strain	Streptococcus suis D12	11	11	1004952
strain	Acinetobacter baumannii D1279779	11	11	945556
strain	Macrococcus caseolyticus JCSC5402	10	10	458233
strain	Escherichia coli UMNK88	10	10	696406
strain	Salmonella enterica subsp. arizonae serovar 62:z4,z23:- str. RSK2980	10	10	882884
strain	Staphylococcus aureus subsp. aureus ST398	10	3	523796
strain	Acinetobacter baumannii ZW85-1	10	10	1400867
strain	Serratia liquefaciens ATCC 27592	9	9	1346614
strain	Shigella flexneri 5 str. 8401	9	9	373384
strain	Carnobacterium maltaromaticum LMA28	9	9	1234679
strain	Bacillus pumilus SAFR-032	9	9	315750
strain	Pseudomonas aeruginosa RP73	9	9	1340851
strain	Escherichia coli O55:H7	9	7	244320
strain	Escherichia coli IAI1	9	9	585034
strain	Escherichia coli ATCC 8739	9	9	481805
strain	Escherichia coli SE11	9	9	409438
strain	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	9	9	342451
strain	Staphylococcus aureus subsp. aureus USA300_FPR3757	9	9	451515
strain	Escherichia coli ED1a	8	8	585397
strain	Enterobacter cloacae subsp. cloacae ENHKU01	8	8	1211025
strain	Escherichia coli O111:H- str. 11128	8	8	585396
strain	Lactobacillus acidophilus NCFM	8	8	272621
strain	Shigella sonnei Ss046	8	8	300269
strain	Enterobacter cloacae subsp. cloacae ATCC 13047	7	7	716541
strain	Ruegeria pomeroyi DSS-3	7	7	246200
strain	Pseudomonas denitrificans ATCC 13867	7	7	1294143
strain	unclassified Peptostreptococcaceae	7	3	200630
strain	Raoultella ornithinolytica B6	7	7	1286170
strain	Ralstonia pickettii 12D	7	7	428406
strain	Pseudomonas mendocina ymp	7	7	399739
strain	Staphylococcus aureus subsp. aureus 71193	7	7	1155084
strain	Escherichia coli NA114	7	7	1033813
strain	Acinetobacter baumannii SDF	7	7	509170
strain	Staphylococcus aureus subsp. aureus 55/2053	7	7	585143
strain	Escherichia coli P12b	6	6	910348
strain	Escherichia coli O26:H11 str. 11368	6	6	573235
strain	Pseudomonas aeruginosa NCGM2.S1	6	6	1089456
strain	Pseudomonas putida HB3267	6	6	1215088
strain	Serratia proteamaculans 568	6	6	399741
strain	Agrobacterium vitis S4	6	6	311402
strain	Mycoplasma hyopneumoniae 232	6	6	295358
strain	Leisingera methylohalidivorans DSM 14336	6	6	999552
strain	Enterobacter asburiae LF7a	6	6	640513
strain	Azospirillum brasilense Sp245	6	6	1064539
strain	Cronobacter turicensis z3032	6	6	693216
strain	Paracoccus aminophilus JCM 7686	5	5	1367847
strain	Escherichia coli O103:H2 str. 12009	5	5	585395
strain	Persephonella marina EX-H1	5	5	123214
strain	Pseudomonas aeruginosa DK2	5	5	1093787
strain	Pseudomonas stutzeri DSM 10701	5	5	1123519
strain	Enterobacter cloacae subsp. cloacae NCTC 9394	5	5	718254
strain	Escherichia coli O157:H7	5	4	83334
strain	Bacillus thuringiensis serovar finitimus YBT-020	5	5	930170
strain	Shimwellia blattae DSM 4481 = NBRC 105725	5	5	630626
strain	Escherichia coli DH1	5	5	536056
strain	Enterobacter cloacae subsp. dissolvens SDM	5	5	1104326
strain	Methylobacterium nodulans ORS 2060	5	5	460265
strain	Amphibacillus xylanus NBRC 15112	5	5	698758
strain	Streptococcus suis 98HAH33	4	4	391296
strain	Methylobacterium radiotolerans JCM 2831	4	4	426355
strain	Mesorhizobium opportunistum WSM2075	4	4	536019
strain	Mesorhizobium ciceri biovar biserrulae WSM1271	4	4	765698
strain	Neisseria lactamica 020-06	4	4	489653
strain	Escherichia coli ABU 83972	4	4	655817
strain	Pantoea vagans C9-1	4	4	712898
strain	Sinorhizobium medicae WSM419	4	4	366394
strain	Staphylococcus aureus subsp. aureus TW20	4	4	663951
strain	Morganella morganii subsp. morganii KT	4	4	1124991
strain	Acinetobacter calcoaceticus PHEA-2	4	4	871585
strain	Xanthomonas campestris pv. campestris	4	3	340
strain	Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1	4	4	990282
strain	Bacillus cereus biovar anthracis str. CI	4	4	637380
strain	Staphylococcus aureus subsp. aureus T0131	4	4	1006543
strain	Candidatus Liberibacter asiaticus str. gxpsy	4	4	1174529
strain	Bacillus weihenstephanensis KBAB4	4	4	315730
strain	Solibacillus silvestris StLB046	4	4	1002809
strain	Tetragenococcus halophilus NBRC 12172	4	4	945021
strain	Thermoanaerobacter wiegelii Rt8.B1	4	4	697303
strain	Corynebacterium jeikeium K411	4	4	306537
strain	Bacillus cytotoxicus NVH 391-98	4	4	315749
strain	Paenibacillus mucilaginosus K02	4	4	997761
strain	Pseudoxanthomonas spadix BD-a59	4	4	1045855
strain	Pseudomonas resinovorans NBRC 106553	4	4	1245471
strain	Neisseria gonorrhoeae TCDC-NG08107	4	4	940296
strain	Polymorphum gilvum SL003B-26A1	4	4	991905
strain	Pelagibacterium halotolerans B2	3	3	1082931
strain	Escherichia coli LF82	3	3	591946
strain	Xanthomonas campestris pv. raphani 756C	3	3	990315
strain	Methylobacterium populi BJ001	3	3	441620
strain	Frateuria aurantia DSM 6220	3	3	767434
strain	Tistrella mobilis KA081020-065	3	3	1110502
strain	Desulfotomaculum gibsoniae DSM 7213	3	3	767817
strain	Pseudomonas mendocina NK-01	3	3	1001585
strain	Terriglobus roseus DSM 18391	3	3	926566
strain	Vibrio cholerae LMA3984-4	3	3	935297
strain	Azospirillum lipoferum 4B	3	3	862719
strain	Brucella melitensis NI	3	3	1029825
strain	Ralstonia pickettii 12J	3	3	402626
strain	Sphingobium chlorophenolicum L-1	3	3	690566
strain	Staphylococcus lugdunensis HKU09-01	3	3	698737
strain	Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1	3	3	877468
strain	Halomonas elongata DSM 2581	3	3	768066
strain	Lactobacillus plantarum WCFS1	3	3	220668
strain	Cronobacter sakazakii SP291	3	3	956149
strain	Dickeya dadantii 3937	3	3	198628
strain	Sinorhizobium fredii NGR234	3	3	394
strain	Sinorhizobium fredii HH103	3	3	1117943
strain	Staphylococcus aureus subsp. aureus Z172	3	3	1406863
strain	Bradyrhizobium oligotrophicum S58	3	3	1245469
strain	Phaeobacter gallaeciensis DSM 26640	3	3	1423144
strain	Oceanobacillus iheyensis HTE831	3	3	221109
strain	Agrobacterium radiobacter K84	3	3	311403
strain	Listeria monocytogenes SLCC2376	3	3	882097
strain	Phenylobacterium zucineum HLK1	3	3	450851
strain	Pseudomonas brassicacearum subsp. brassicacearum NFM421	3	3	994484
strain	Streptococcus parasanguinis ATCC 15912	3	3	760570
strain	Klebsiella oxytoca KCTC 1686	3	3	1006551
strain	Aeromonas hydrophila ML09-119	3	3	1288394
strain	Burkholderia mallei NCTC 10247	3	3	320389
strain	Pseudoxanthomonas suwonensis 11-1	3	3	743721
strain	Chthonomonas calidirosea T49	3	3	1303518
strain	Comamonas testosteroni CNB-2	3	3	688245
strain	Streptococcus agalactiae SA20-06	3	3	1231389
strain	Streptococcus agalactiae ILRI112	2	2	1318615
strain	Leptothrix cholodnii SP-6	2	2	395495
strain	Methylobacterium extorquens AM1	2	2	272630
strain	Nitrobacter hamburgensis X14	2	2	323097
strain	Pseudomonas fluorescens A506	2	2	1037911
strain	Fervidobacterium nodosum Rt17-B1	2	2	381764
strain	Azospirillum sp. B510	2	2	137722
strain	Ferrimonas balearica DSM 9799	2	2	550540
strain	Streptococcus thermophilus JIM 8232	2	2	1051074
strain	Flavobacterium johnsoniae UW101	2	2	376686
strain	Catenulispora acidiphila DSM 44928	2	2	479433
strain	Salmonella enterica subsp. enterica serovar Heidelberg	2	1	611
strain	Pseudomonas protegens CHA0	2	2	1124983
strain	Bacillus amyloliquefaciens XH7	2	2	1034836
strain	Enterobacter aerogenes KCTC 2190	2	2	1028307
strain	Brevundimonas subvibrioides ATCC 15264	2	2	633149
strain	Staphylococcus aureus subsp. aureus SA40	2	2	1194085
strain	Syntrophomonas wolfei subsp. wolfei str. Goettingen G311	2	2	335541
strain	Streptomyces cattleya NRRL 8057 = DSM 46488	2	2	1003195
strain	Cupriavidus taiwanensis LMG 19424	2	2	977880
strain	Simiduia agarivorans SA1 = DSM 21679	2	2	1117647
strain	Bacillus thuringiensis HD-789	2	2	1217737
strain	Bacillus megaterium QM B1551	2	2	545693
strain	Salmonella enterica subsp. enterica serovar Paratyphi A	2	2	54388
strain	Bacillus amyloliquefaciens LFB112	2	2	1415165
strain	Pseudomonas putida W619	2	2	390235
strain	Shigella flexneri 2002017	2	2	591020
strain	Pseudomonas fulva 12-X	2	2	743720
strain	Klebsiella variicola At-22	2	2	640131
strain	Clostridium acidurici 9a	2	2	1128398
strain	Cronobacter sakazakii CMCC 45402	2	2	1401659
strain	Staphylococcus aureus 04-02981	2	2	703339
strain	Rahnella aquatilis CIP 78.65 = ATCC 33071	2	2	745277
strain	Thermobifida fusca YX	2	2	269800
strain	Streptococcus anginosus C1051	2	2	862970
strain	Pseudomonas stutzeri ATCC 17588 = LMG 11199	2	2	96563
strain	Streptococcus iniae SF1	2	2	1318633
strain	Bacillus cereus E33L	2	2	288681
strain	Methanobrevibacter ruminantium M1	2	2	634498
strain	Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992	2	2	1267753
strain	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921	2	2	1271862
strain	Roseobacter denitrificans OCh 114	2	2	375451
strain	Lysinibacillus sphaericus C3-41	2	2	444177
strain	Serratia plymuthica S13	2	2	1348660
strain	Geobacillus thermodenitrificans NG80-2	2	2	420246
strain	Escherichia coli S88	2	2	585035
strain	Xenorhabdus nematophila ATCC 19061	2	2	406817
strain	Nitrosococcus halophilus Nc 4	2	2	472759
strain	Clostridium saccharoperbutylacetonicum N1-4(HMT)	2	2	931276
strain	Sphingopyxis alaskensis RB2256	2	2	317655
strain	Bacillus cereus ATCC 14579	2	2	226900
strain	Staphylococcus aureus subsp. aureus NCTC 8325	2	2	93061
strain	Acinetobacter baumannii AB0057	2	2	480119
strain	Hyphomicrobium nitrativorans NL23	2	2	1029756
strain	Erwinia tasmaniensis Et1/99	2	2	465817
strain	Listeria innocua Clip11262	2	2	272626
strain	Pectobacterium atrosepticum SCRI1043	2	2	218491
strain	Helicobacter pylori 26695	2	2	85962
strain	Chromohalobacter salexigens DSM 3043	2	2	290398
strain	Xanthomonas albilineans GPE PC73	2	2	380358
strain	Starkeya novella DSM 506	2	2	639283
strain	Aquifex aeolicus VF5	2	2	224324
strain	Shigella flexneri 2a str. 301	2	2	198214
strain	Propionibacterium avidum 44067	2	2	1170318
strain	Pandoraea sp. RB-44	2	2	1380774
strain	Azorhizobium caulinodans ORS 571	2	2	438753
strain	Variovorax paradoxus EPS	2	2	595537
strain	Streptococcus intermedius B196	2	2	862967
strain	Bacillus infantis NRRL B-14911	2	2	1367477
strain	Staphylococcus aureus subsp. aureus Mu50	2	2	158878
strain	Asticcacaulis excentricus CB 48	2	2	573065
strain	Rhodopseudomonas palustris TIE-1	2	2	395960
strain	Melissococcus plutonius ATCC 35311	2	2	940190
strain	Enterococcus casseliflavus EC20	2	2	565655
strain	Clostridium difficile 630	2	2	272563
strain	Aerococcus urinae ACS-120-V-Col10a	2	2	866775
strain	Candidatus Midichloria mitochondrii IricVA	2	2	696127
strain	Streptococcus gordonii str. Challis substr. CH1	2	2	467705
strain	Geobacillus thermoglucosidasius C56-YS93	2	2	634956
strain	Shigella sonnei 53G	2	2	216599
strain	Streptococcus sanguinis SK36	2	2	388919
strain	Enterobacter cloacae EcWSU1	2	2	1045856
strain	Escherichia coli BW2952	2	2	595496
strain	Deinococcus proteolyticus MRP	1	1	693977
strain	Ramlibacter tataouinensis TTB310	1	1	365046
strain	Streptococcus parasanguinis FW213	1	1	1114965
strain	Rhizobium etli CFN 42	1	1	347834
strain	Acidovorax avenae subsp. avenae ATCC 19860	1	1	643561
strain	Mycoplasma pulmonis UAB CTIP	1	1	272635
strain	Xanthomonas campestris pv. campestris str. B100	1	1	509169
strain	Mycoplasma agalactiae PG2	1	1	347257
strain	Prevotella melaninogenica ATCC 25845	1	1	553174
strain	Photobacterium profundum SS9	1	1	298386
strain	Alcanivorax dieselolei B5	1	1	930169
strain	Bacillus amyloliquefaciens subsp. plantarum	1	1	1054400
strain	Erysipelothrix rhusiopathiae str. Fujisawa	1	1	650150
strain	Elusimicrobium minutum Pei191	1	1	445932
strain	Bacillus thuringiensis serovar kurstaki str. HD73	1	1	1279365
strain	Yersinia pseudotuberculosis IP 31758	1	1	349747
strain	Helicobacter pylori 52	1	1	684950
strain	Burkholderia phymatum STM815	1	1	391038
strain	Pseudomonas entomophila L48	1	1	384676
strain	Acidiphilium multivorum AIU301	1	1	926570
strain	Pseudomonas syringae pv. syringae B728a	1	1	205918
strain	Leuconostoc mesenteroides subsp. mesenteroides J18	1	1	1107880
strain	Pectobacterium carotovorum subsp. carotovorum PC1	1	1	561230
strain	Eubacterium siraeum V10Sc8a	1	1	717961
strain	Deinococcus gobiensis I-0	1	1	745776
strain	Rhodopseudomonas palustris BisB5	1	1	316057
strain	Intrasporangium calvum DSM 43043	1	1	710696
strain	Mycoplasma arthritidis 158L3-1	1	1	243272
strain	Pseudomonas stutzeri DSM 4166	1	1	996285
strain	Cupriavidus metallidurans CH34	1	1	266264
strain	Hyphomicrobium denitrificans 1NES1	1	1	670307
strain	Salmonella bongori N268-08	1	1	1197719
strain	Shewanella amazonensis SB2B	1	1	326297
strain	Helicobacter pylori UM066	1	1	1321940
strain	Mycoplasma synoviae 53	1	1	262723
strain	Pseudomonas fluorescens Pf0-1	1	1	205922
strain	Roseobacter litoralis Och 149	1	1	391595
strain	Brevibacillus brevis NBRC 100599	1	1	358681
strain	Bacillus amyloliquefaciens IT-45	1	1	1091041
strain	Lactobacillus plantarum subsp. plantarum P-8	1	1	767468
strain	Candidatus Zinderia insecticola CARI	1	1	871271
strain	Maricaulis maris MCS10	1	1	394221
strain	Leuconostoc kimchii IMSNU 11154	1	1	762051
strain	Caulobacter crescentus CB15	1	1	190650
strain	Yersinia enterocolitica subsp. enterocolitica 8081	1	1	393305
strain	Edwardsiella tarda EIB202	1	1	498217
strain	Prochlorococcus marinus str. NATL2A	1	1	59920
strain	Alicycliphilus denitrificans K601	1	1	596154
strain	Acinetobacter baumannii TYTH-1	1	1	1100841
strain	[Eubacterium] cylindroides T2-87	1	1	717960
strain	Staphylococcus aureus subsp. aureus JH9	1	1	359786
strain	Klebsiella pneumoniae CG43	1	1	1244085
strain	Streptococcus suis S735	1	1	1184252
strain	Anaeromyxobacter dehalogenans 2CP-1	1	1	455488
strain	Candidatus Vesicomyosocius okutanii HA	1	1	412965
strain	Filifactor alocis ATCC 35896	1	1	546269
strain	Helicobacter pylori Puno120	1	1	1055528
strain	Clostridium botulinum B str. Eklund 17B	1	1	508765
strain	Helicobacter acinonychis str. Sheeba	1	1	382638
strain	Burkholderia mallei NCTC 10229	1	1	412022
strain	Spiribacter salinus M19-40	1	1	1260251
strain	Chlorobium limicola DSM 245	1	1	290315
strain	Bacillus cereus AH820	1	1	405535
strain	Cellulomonas flavigena DSM 20109	1	1	446466
strain	Saccharopolyspora erythraea NRRL 2338	1	1	405948
strain	Methylomonas methanica MC09	1	1	857087
strain	Desulfotalea psychrophila LSv54	1	1	177439
strain	Buchnera aphidicola str. Bp (Baizongia pistaciae)	1	1	224915
strain	Escherichia coli IAI39	1	1	585057
strain	Gloeobacter kilaueensis JS1	1	1	1183438
strain	Burkholderia gladioli BSR3	1	1	999541
strain	Veillonella parvula DSM 2008	1	1	479436
strain	Streptococcus equi subsp. zooepidemicus ATCC 35246	1	1	1051072
strain	Polaromonas naphthalenivorans CJ2	1	1	365044
strain	Odoribacter splanchnicus DSM 220712	1	1	709991
strain	Streptococcus pyogenes MGAS2096	1	1	370553
strain	Planctomyces brasiliensis DSM 5305	1	1	756272
strain	Alkaliphilus metalliredigens QYMF	1	1	293826
strain	Thermoanaerobacterium saccharolyticum JW/SL-YS485	1	1	1094508
strain	Rubrobacter xylanophilus DSM 9941	1	1	266117
strain	Escherichia coli O55:H7 str. CB9615	1	1	701177
strain	Xylanimonas cellulosilytica DSM 15894	1	1	446471
strain	Streptococcus constellatus subsp. pharyngis C232	1	1	696216
strain	Bacillus cereus F837/76	1	1	347495
strain	Thermacetogenium phaeum DSM 12270	1	1	1089553
strain	Eubacterium rectale ATCC 33656	1	1	515619
strain	Klebsiella oxytoca E718	1	1	1191061
strain	Bacillus halodurans C-125	1	1	272558
strain	Chromobacterium violaceum ATCC 12472	1	1	243365
strain	Anaerolinea thermophila UNI-1	1	1	926569
strain	Sphingomonas wittichii RW1	1	1	392499
strain	Helicobacter pylori B8	1	1	693745
strain	Bacillus licheniformis DSM 13 = ATCC 14580	1	1	279010
strain	Salmonella enterica subsp. enterica serovar Heidelberg str. B182	1	1	1160717
strain	Escherichia coli O55:H7 str. RM12579	1	1	1048689
strain	Caldicellulosiruptor obsidiansis OB47	1	1	608506
strain	Borrelia recurrentis A1	1	1	412418
strain	Methylocella silvestris BL2	1	1	395965
strain	Streptococcus salivarius JIM8777	1	1	347253
strain	Streptococcus anginosus C238	1	1	862971
strain	Lactobacillus ruminis ATCC 27782	1	1	1069534
strain	Sinorhizobium meliloti Rm41	1	1	1230587
strain	Cardinium endosymbiont cEper1 of Encarsia pergandiella	1	1	1231626
strain	Streptococcus parauberis KCTC 11537	1	1	936154
strain	Anoxybacillus flavithermus WK1	1	1	491915
strain	Bacillus cereus Q1	1	1	361100
strain	Pseudomonas putida H8234	1	1	1331671
strain	Pediococcus claussenii ATCC BAA-344	1	1	701521
strain	Pseudoalteromonas haloplanktis TAC125	1	1	326442
strain	Phaeobacter gallaeciensis 2.10	1	1	383629
strain	Acidimicrobium ferrooxidans DSM 10331	1	1	525909
strain	Escherichia coli O157:H7 str. EDL933	1	1	155864
strain	Lactobacillus reuteri TD1	1	1	1358027
strain	Sorangium cellulosum So0157-2	1	1	1254432
strain	Escherichia coli APEC O1	1	1	405955
strain	Carboxydothermus hydrogenoformans Z-2901	1	1	246194
strain	Streptococcus suis T15	1	1	1340847
strain	Bacillus thuringiensis serovar konkukian str. 97-27	1	1	281309
strain	Dechlorosoma suillum PS	1	1	640081
strain	Megasphaera elsdenii DSM 20460	1	1	1064535
strain	Bradyrhizobium japonicum USDA 6	1	1	1037409
strain	Listeria welshimeri serovar 6b str. SLCC5334	1	1	386043
strain	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	1	1	525146
strain	Moraxella catarrhalis RH4	1	1	749219
strain	Francisella philomiragia subsp. philomiragia ATCC 25017	1	1	484022
strain	Gluconobacter oxydans 621H	1	1	290633
strain	Pseudomonas fluorescens F113	1	1	1114970
strain	Helicobacter pylori Aklavik117	1	1	1055531
strain	Bacillus clausii KSM-K16	1	1	66692
strain	Pseudomonas protegens Pf-5	1	1	220664
strain	Desulfococcus oleovorans Hxd3	1	1	96561
strain	Mycoplasma mobile 163K	1	1	267748
strain	Thermobacillus composti KWC4	1	1	717605
strain	Variovorax paradoxus S110	1	1	543728
strain	Alkaliphilus oremlandii OhILAs	1	1	350688
strain	Mycoplasma crocodyli MP145	1	1	512564
strain	Erythrobacter litoralis HTCC2594	1	1	314225
strain	Glaciecola nitratireducens FR1064	1	1	1085623
strain	Runella slithyformis DSM 19594	1	1	761193
strain	Streptococcus mitis B6	1	1	365659
strain	Streptococcus agalactiae A909	1	1	205921
strain	Bifidobacterium thermophilum RBL67	1	1	1254439
strain	Gluconacetobacter diazotrophicus PAl 5	1	1	272568
strain	Neisseria gonorrhoeae NCCP11945	1	1	521006
strain	Rhodopseudomonas palustris BisA53	1	1	316055
strain	Helicobacter pylori SNT49	1	1	1055530
strain	Cytophaga hutchinsonii ATCC 33406	1	1	269798
strain	Lactobacillus johnsonii NCC 533	1	1	257314
strain	Thermodesulfobacterium geofontis OPF15	1	1	795359
strain	Helicobacter mustelae 12198	1	1	679897
strain	Candidatus Blochmannia vafer str. BVAF	1	1	859654
strain	Achromobacter xylosoxidans NBRC 15126 = ATCC 27061	1	1	1216976
strain	Pseudomonas putida NBRC 14164	1	1	1211579
strain	Albidiferax ferrireducens T118	1	1	338969
strain	Actinoplanes missouriensis 431	1	1	512565
strain	Thermomonospora curvata DSM 43183	1	1	471852
strain	Streptomyces coelicolor A3(2)	1	1	100226
strain	Kytococcus sedentarius DSM 20547	1	1	478801
strain	Mycoplasma hyopneumoniae 168-L	1	1	1116211
strain	Corynebacterium variabile DSM 44702	1	1	858619
strain	Aeromonas salmonicida subsp. salmonicida A449	1	1	382245
strain	Vibrio cholerae O1	1	1	127906
strain	Wigglesworthia glossinidia endosymbiont of Glossina morsitans morsitans (Yale colony)	1	1	1142511
strain	Rhodopseudomonas palustris DX-1	1	1	652103
strain	Mesorhizobium australicum WSM2073	1	1	754035
strain	Chitinophaga pinensis DSM 2588	1	1	485918
strain	Xanthobacter autotrophicus Py2	1	1	78245
strain	Shewanella denitrificans OS217	1	1	318161
strain	Deferribacter desulfuricans SSM1	1	1	639282
strain	Bacillus subtilis XF-1	1	1	1233100
strain	Clostridium difficile M68	1	1	699037
strain	Moorella thermoacetica ATCC 39073	1	1	264732
strain	Listeria monocytogenes SLCC7179	1	1	879090
strain	Helicobacter pylori P12	1	1	570508
strain	Escherichia coli O104:H4 str. 2011C-3493	1	1	1133852
strain	Bifidobacterium dentium Bd1	1	1	401473
strain	Rhizobium tropici CIAT 899	1	1	698761
strain	Candidatus Nitrososphaera gargensis Ga9.2	1	1	1237085
strain	Leuconostoc gasicomitatum LMG 18811	1	1	762550
strain	Dickeya dadantii Ech586	1	1	590409
strain	Helicobacter pylori ELS37	1	1	1055527
strain	Erwinia pyrifoliae Ep1/96	1	1	634499
strain	Burkholderia rhizoxinica HKI 454	1	1	882378
strain	Nocardia cyriacigeorgica GUH-2	1	1	1127134
strain	Clostridium botulinum A2 str. Kyoto	1	1	536232
strain	Listeria monocytogenes ATCC 19117	1	1	882095
strain	Weissella koreensis KACC 15510	1	1	1045854
strain	Streptococcus suis ST3	1	1	1007064
strain	Escherichia coli 55989	1	1	585055
strain	Desulfovibrio salexigens DSM 2638	1	1	526222
strain	Alteromonas macleodii AltDE1	1	1	1004786
strain	Escherichia coli IHE3034	1	1	714962
strain	Leuconostoc citreum KM20	1	1	349519
strain	Bartonella clarridgeiae 73	1	1	696125
strain	Bacillus thuringiensis BMB171	1	1	714359
strain	Enterococcus faecium DO	1	1	333849
strain	Methylibium petroleiphilum PM1	1	1	420662
strain	Clostridium pasteurianum BC1	1	1	86416
strain	Haliangium ochraceum DSM 14365	1	1	502025
strain	Sinorhizobium meliloti 1021	1	1	266834
strain	Clostridium tetani 12124569	1	1	1231072
strain	Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis	1	1	36870
strain	Pseudomonas stutzeri A1501	1	1	379731
strain	Deinococcus peraridilitoris DSM 19664	1	1	937777
strain	Helicobacter pylori SouthAfrica7	1	1	907239
strain	Kitasatospora setae KM-6054	1	1	452652
strain	Candidatus Chloracidobacterium thermophilum B	1	1	981222
strain	Cyanobacterium aponinum PCC 10605	1	1	755178
strain	Thioflavicoccus mobilis 8321	1	1	765912
strain	Streptococcus uberis 0140J	1	1	218495
strain	Bacillus subtilis BSn5	1	1	936156
strain	Burkholderia cenocepacia J2315	1	1	216591
strain	Magnetospirillum gryphiswaldense MSR-1 v2	1	1	1430440
strain	Parachlamydia acanthamoebae UV-7	1	1	765952
strain	Streptococcus intermedius JTH08	1	1	591365
strain	Sorangium cellulosum So ce56	1	1	448385
strain	Desulfovibrio magneticus RS-1	1	1	573370
strain	Kosmotoga olearia TBF 19.5.1	1	1	521045
strain	Nautilia profundicola AmH	1	1	598659
strain	Streptococcus pneumoniae TCH8431/19A	1	1	525381
strain	Desulfobacula toluolica Tol2	1	1	651182
strain	Enterobacter aerogenes EA1509E	1	1	935296
strain	Lactobacillus reuteri JCM 1112	1	1	557433
strain	Alcanivorax borkumensis SK2	1	1	393595
strain	Halobacillus halophilus DSM 2266	1	1	866895
strain	Corynebacterium glutamicum ATCC 13032	1	1	196627
strain	Agrobacterium fabrum str. C58	1	1	176299
strain	Nitrobacter winogradskyi Nb-255	1	1	323098
strain	Syntrophobacter fumaroxidans MPOB	1	1	335543
strain	Variovorax paradoxus B4	1	1	1246301
strain	Sinorhizobium meliloti GR4	1	1	1235461
strain	Burkholderia ambifaria MC40-6	1	1	398577
no rank	cellular organisms	5563054	128	131567
no rank	dsDNA viruses, no RNA stage	1537	1	35237
no rank	unclassified Siphoviridae	1511	723	196894
no rank	Bacteroidetes/Chlorobi group	1403	0	68336
no rank	unclassified Bacteria	8	0	2323
no rank	candidate division SR1	6	0	221235
no rank	unclassified Alphaproteobacteria	6	0	82117
no rank	ssDNA viruses	4	0	29258
no rank	unclassified Burkholderiales	3	0	119065
no rank	unclassified Gammaproteobacteria	3	0	118884
no rank	unclassified Bacteria (miscellaneous)	1	0	49928
no rank	unclassified Bacteroidetes	1	0	171558
no rank	unclassified phages	1	0	12333
no rank	unclassified Myoviridae	1	0	196896
no rank	unclassified Acidobacteria	1	0	458031
no rank	unclassified Betaproteobacteria	1	0	119066
no rank	sulfur-oxidizing symbionts	1	0	32036
no rank	unclassified dsDNA phages	1	0	79205
unclassified	unclassified	2310526	2310526	0
