abf                     Approximate Bayes Factor
analyse.models          Summarize MCMC sample of Bayesian logic
                        regression models
buildSNPannotation      Construct Annotation for Affymetrix SNP Chips
colEpistatic            Cordell's Test for Epistatic Interactions
computeContCells        Pairwise Contingency Tables
computeContClass        Rowwise Contigency Tables
fblr                    Full Bayesian Logic Regression for SNP Data
gknn                    Generalized k Nearest Neighbors
identifyMonomorphism    Identification of Constant Variables
knncatimpute            Missing Value Imputation with kNN
knncatimputeLarge       Missing Value Imputation with kNN for
                        High-Dimensional Data
pamCat                  Prediction Analysis of Categorical Data
pcc                     Pearson's Contingency Coefficient
predict.pamCat          Predict Method for pamCat Objects
predictFBLR             Predict Case Probabilities with Full Bayesian
                        Logic Regression
recodeAffySNP           Recoding of Affymetrix SNP Values
recodeSNPs              Recoding of SNP Values
rowCATTs                Rowwise Cochran-Armitage Trend Test Based on
                        Tables
rowChisq2Class          Rowwise Pearson's ChiSquare Test Based on
                        Tables
rowChisqStats           Rowwise Pearson's ChiSquare Statistic
rowCors                 Rowwise Correlation with a Vector
rowFreqs                Rowwise Frequencies
rowHWEs                 Rowwise Test for Hardy-Weinberg Equilibrium
rowMAFs                 Rowwise Minor Allele Frequency
rowMsquares             Rowwise Linear Trend Test Based on Tables
rowScales               Rowwise Scaling
rowTables               Rowwise Tables
rowTrendFuzzy           Trend Test for Fuzzy Genotype Calls
rowTrendStats           Rowwise Linear Trend Tests
shortenGeneDescription
                        Shorten the Gene Description
showChanges             Displaying Changes
simulateSNPcatResponse
                        Simulation of SNP Data with Categorical
                        Response
simulateSNPglm          Simulation of SNP data
simulateSNPs            Simulation of SNP data
smc                     Simple Matching Coefficient and Cohen's Kappa
snp2bin                 Transformation of SNPs to Binary Variables
summary.simSNPglm       Summarizing a simSNPglm object
