example_rep             Example repertoire data
generate_ogrdb_report   Generate OGRDB reports from specified files.
genotype_statistics_cmd
                        Collect parameters from the command line and
                        use them to create a report and CSV file
make_barplot_grobs      Create a barplot for each allele, showing
                        number of reads distributed by mutation count
make_haplo_grobs        Create haplotyping plots
make_novel_base_grobs   Create plots showing base usage at selected
                        locations in sequences based on novel alleles
read_input_files        Read input files into memory
write_genotype_file     Write the genotype file required by OGRDB
write_plot_file         Create the OGRDB style plot file
