clusterInfectors        Clusters the infectors based on their
                        transmission probabilities
estimateR               Estimates the effective reproductive number
estimateRi              Estimates individual-level reproductive numbers
estimateRt              Estimates time-level reproductive numbers
estimateRtAvg           Estimates the average effective reproductive
                        number
estimateSI              Estimates the generation/serial interval
                        distribution
indData                 Individual-level simulated outbreak dataset
indToPair               Transforms a dataset of individuals to a
                        dataset of pairs
nbHeatmap               Plots a heatmap of the relative transmission
                        probabilities
nbNetwork               Plots a network of the relative transmission
                        probabilities
nbProbabilities         Estimates relative transmission probabilities
nbResults               Dataset with results of 'nbProbabilities'
pairData                Pair-level simulated outbreak dataset
performNB               Performs naive bayes classification
performPEM              Executes the PEM algorthim to estimate the
                        generation/serial interval distribution
plotRt                  Creates a plot of the effective reproductive
                        number
